Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi77g00086 ATGGATCAGTCAAGAAGCAAAGGCAGTGGTGAGATACTGGATCGTGTTGATGAAGGGGTGGATGCGAATTTGAGCCATTTGGTTGAAAAGGTTGCAATTGATGCAGGAGCTGGACGTAGCTTGGGTGACAGAGTTAGTGTGAGTGGGGAAGATGGGACTTCAGAAGAGATGGGCAATGGTCTCGGATTGAATAAGGAGCTAAAGGAGAGGCTTGAAGAATTTAAGGATCAGGACATGGGTGATCCACAAAAAATCAATGATACATTGCACGGGGTTGATCAAGGAACTAGTTATAATTCAAGTAATGATAATGGGGCAGTACTTGAGACCCGTGTTGTAATAGATTCTTCTGCTCAGATTGAGCATGTTAATGGAGATAATAGGAAATTGGAAGCAAAAGCTAATCAATCAGGGTTGAGCAAGTTAACCATTAAGGCACCAAAAGGGGTGTCTGAGACAGATAAAAATTCATGTGTGATTGATATAAACTGTGGCAGCTGCAAAGGGTTTAGTGAGAATTTGGAAGGTGAAAGGATTTGTAGGATCTGCCATCTGGCCTCTGGGCAACCATTAGAAGCAACTGGTGTTGGCATTCCAAATAGTGGTACTAATAGTACAACTTTGATTGTGCTTGGTTGTGCATGTAAAGATGAGCTAGGCATTGCACACAGTCATTGCGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTAA 714 0.4258 MDQSRSKGSGEILDRVDEGVDANLSHLVEKVAIDAGAGRSLGDRVSVSGEDGTSEEMGNGLGLNKELKERLEEFKDQDMGDPQKINDTLHGVDQGTSYNSSNDNGAVLETRVVIDSSAQIEHVNGDNRKLEAKANQSGLSKLTIKAPKGVSETDKNSCVIDINCGSCKGFSENLEGERICRICHLASGQPLEATGVGIPNSGTNSTTLIVLGCACKDELGIAHSHCAEAWFKIKGNR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi77g00086 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 237 IPR013083 -
Sebi77g00086 237 ProSiteProfiles Zinc finger RING-CH-type profile. 172 237 IPR011016 GO:0008270
Sebi77g00086 237 SMART ringv_2 179 237 IPR011016 GO:0008270
Sebi77g00086 237 PANTHER ZINC FINGER, RING-CH-TYPE 85 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi77g00086 Sebi-Chr77 1183822 1184535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi77g00086 175 237 C3H Transcription Factor Family AT5G05830 47.692 1.23e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi77g00086 - - gmx:100791129 343.199