Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi77g00023 ATGTCAGGCGTTTCGCTCAAGTGCGGAGACTGTGGGGCTCTGTTGAGGTCCGTAGAAGAAGCCCAGGAGCATGCTGAGCTAACCTCCCACTCCAACTTCTCCGAATCCACCGAACCCGTTCTCAACCTCGTCTGCACCACTTGCTCCAAGCCCTGCCGATCCAAAACCGAGAGTGATTTGCACACGAAAAGAACCGGGCACACTGAGTTTGTTGATAAGACTTCGGAGGCAGCAAAACCAATAAGTTTAGAGGCTCCAAAGGTGGATGCAACGTCACAGGACACTTCCGGTGCAACCACTGACCAAAATGAAGAAATGGTTGTTCCAGAAGTTGACAAAAAGCTACTTGAGGAACTTGAATCAATGGGTTTTTCAACTGCACGAGCAACACGGGCACTTCATTATTCTGGTAACACTGGCCTTGAGGCTGCTGTATCTTGGATAGTAGAGCATGAGAATGACCCTGACATAGATCAGATGCCCTTGGTACCTACCAACACCAAAGTTGAGGCTCCTAAACCTTCTCTTACCCCAGGAGAGATAAAGGCCAAACAACAGGAACTAAGGATATTTGGGGTTGTGCATGAGAGAATTCGAATTGGTAAGGAGTTGCTGGAAGCCAAGAGGATTGAAGAAGAGAATGAGAGAAAACGGTTGTTGGCTTTGAGAAAAGCAGAGAAAGAGGAAGAGAAAAGGGCTAGAGAGAAGATCAGGCAAAAGTTGGAAGAAGACAAGGCAGAAAGAAGGCGAAGACTTGGATTGCCTCCAGAGGAGCCTTCAGAAGCCAAACCTTCAACTGTTGTAGAGGAGAAGAAGAGTTTTCTGCCAGTTAGGCCTGCCACAAAAGCTGAGCAGATGAGAGAGTGTTTGCGTTCTCTCAAGCAGAACCACAAGGAGGATGATGCCAGAGTAAAGAGAGCATTCCAAACTCTTCTAACCTACGTGGGGAATGTTGCCAGAAATCCCAGTGAAGAAAAATTCAGGAAGATTCGTCTTAGTAACCAAACTTTTCAGGAAAGAGTTGGTGCCTTGAAAGGGGGCATTGAGTTCCTGGAAATTTGCGGCTTTGAGAAGATCGAAGGTGGTGAGTTTTTGTTTTTGCCTAGGGACAAGGTTGAGATGGCAGTCCTGAATTCAGCTGGATCTGAACTAGACTCTGCAATAAAGAATCCATTTTTTGGAGTTCTTTAG 1191 0.466 MSGVSLKCGDCGALLRSVEEAQEHAELTSHSNFSESTEPVLNLVCTTCSKPCRSKTESDLHTKRTGHTEFVDKTSEAAKPISLEAPKVDATSQDTSGATTDQNEEMVVPEVDKKLLEELESMGFSTARATRALHYSGNTGLEAAVSWIVEHENDPDIDQMPLVPTNTKVEAPKPSLTPGEIKAKQQELRIFGVVHERIRIGKELLEAKRIEEENERKRLLALRKAEKEEEKRAREKIRQKLEEDKAERRRRLGLPPEEPSEAKPSTVVEEKKSFLPVRPATKAEQMRECLRSLKQNHKEDDARVKRAFQTLLTYVGNVARNPSEEKFRKIRLSNQTFQERVGALKGGIEFLEICGFEKIEGGEFLFLPRDKVEMAVLNSAGSELDSAIKNPFFGVL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi77g00023 396 SMART PGNneu 306 369 - -
Sebi77g00023 396 PANTHER F13M7.16 PROTEIN 1 396 - -
Sebi77g00023 396 SUPERFAMILY UBA-like 98 165 IPR009060 GO:0005515
Sebi77g00023 396 Gene3D - 283 386 - -
Sebi77g00023 396 Pfam UBA/TS-N domain 116 148 IPR015940 -
Sebi77g00023 396 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Sebi77g00023 396 MobiDBLite consensus disorder prediction 240 268 - -
Sebi77g00023 396 CDD PUB_UBA_plant 290 396 - -
Sebi77g00023 396 MobiDBLite consensus disorder prediction 240 271 - -
Sebi77g00023 396 Pfam PUB domain 303 373 IPR018997 -
Sebi77g00023 396 SUPERFAMILY PUG domain-like 278 392 IPR036339 -
Sebi77g00023 396 MobiDBLite consensus disorder prediction 74 102 - -
Sebi77g00023 396 CDD UBA_PUB_plant 110 158 - -
Sebi77g00023 396 Gene3D - 112 158 - -
Sebi77g00023 396 SMART uba_6 112 150 IPR015940 -
Sebi77g00023 396 Coils Coil 202 247 - -
Sebi77g00023 396 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Sebi77g00023 396 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi77g00023 Sebi-Chr77 262733 270031 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi77g00023 94 396 C2H2 Transcription Factor Family AT1G04850 71.250 1.84e-149 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi77g00023 K24348 - gmx:100794687 647.506