Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi779g00010 ATGAAAGCTGCCATTGGCATGAGAAGCTCTACAAGATGCAAAGGTTTCAAGGGTGCACAACCTGGTCTAGTTCTCGCATGGGCTCAAAGAGTTAAAATTGTTGTTGGTGCAGCTAGAGGACTTGAATATCTTCATGAAAAGGCAGAGACTCATATTATCCTTCGTTACATTAAGTCTAGTAACATAATGCTTTTCGATGATGATGTTGCAAAGATTGCTGATTTTGATTTGCCAAATCAAGCCCCTGATGCAGCAGCACGCACGACTTCATTCTACCCGTGTTCTTGGAACCTTTGGTTATCATGCTCCAGAATCTCTGCACTATTGGAAAGATTGACTTCCACAATGACGTTTGAAGAACTTGGCATTGCAACTGACTCCTTTACTATTGACAATGCCATTGGGATAGGGAAGATGGGAACAATGTACGAGGGTAGACTACCTAACAATTGCTGCCTAGCTGTTAAGAGACTAAATGATTTTCAACTGTTTAAGAGGCGGTTCCTTTTAGAAACATTTATTCTGTGTAAGTTCACACACAGAAATATAGTTCCCCTGCTTGGCTTCTGCAATGAAATAAATGAAAGGATTTTGGCATACCCATACATGTCAAATGGAAGACTTTCCAAATGGTTGCATCCTTTAGAATTTGAAGTTATGAGATTGAAATGGCCTCAGAGGCTTAATATAGCACTTGGGGTAGCAAGAGGCTTATCCTGGCTCCATCATAGCTGCAGTTTACATATAGTGCATTTCAATATATGTTCACAATGTATATTGCTAGATGAGAATTTTGAACCCAAAATATCCAATTTTGGAGAGGCCAAATTTATGAATCCCAATAATGAGGATGATCTTGCCATGACATTTAAAGTAAATAATGGGAAGAAGGATGTGTATGACTTTGGAAGTGTACTTTTTGAACTGATTACAGGGGAAACATATGATGAACTTTCCCGTTCATCAAACACTACTACTAATCTCTGTGGTAACCCATCAAAGTTTTTTAATGCAATTGATAAATCTCTGATTGGAGAAGGATTTGAAAATGAAATGTGTAATCTCCTCAAAATTGCTTCTGAGTGTGTTCAGCCCTTACCAGATCAAAGGCCAACAATGCTTGAAGTACACAACAATATAAGCAATATATGGAAGGGACGACCAAGATTCAGGGATGATTCTGATGCACCCAGGGGATCAGAAATTGCTTCTGTTACTTGTACAGATGAAATTGTCGAGTTATAA 1245 0.3863 MKAAIGMRSSTRCKGFKGAQPGLVLAWAQRVKIVVGAARGLEYLHEKAETHIILRYIKSSNIMLFDDDVAKIADFDLPNQAPDAAARTTSFYPCSWNLWLSCSRISALLERLTSTMTFEELGIATDSFTIDNAIGIGKMGTMYEGRLPNNCCLAVKRLNDFQLFKRRFLLETFILCKFTHRNIVPLLGFCNEINERILAYPYMSNGRLSKWLHPLEFEVMRLKWPQRLNIALGVARGLSWLHHSCSLHIVHFNICSQCILLDENFEPKISNFGEAKFMNPNNEDDLAMTFKVNNGKKDVYDFGSVLFELITGETYDELSRSSNTTTNLCGNPSKFFNAIDKSLIGEGFENEMCNLLKIASECVQPLPDQRPTMLEVHNNISNIWKGRPRFRDDSDAPRGSEIASVTCTDEIVEL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi779g00010 414 Pfam Protein tyrosine and serine/threonine kinase 25 96 IPR001245 GO:0004672|GO:0006468
Sebi779g00010 414 Pfam Protein tyrosine and serine/threonine kinase 129 379 IPR001245 GO:0004672|GO:0006468
Sebi779g00010 414 SUPERFAMILY Protein kinase-like (PK-like) 25 86 IPR011009 -
Sebi779g00010 414 ProSiteProfiles Protein kinase domain profile. 128 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi779g00010 414 SUPERFAMILY Protein kinase-like (PK-like) 109 378 IPR011009 -
Sebi779g00010 414 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 23 80 - -
Sebi779g00010 414 Gene3D Phosphorylase Kinase; domain 1 100 202 - -
Sebi779g00010 414 Gene3D Transferase(Phosphotransferase) domain 1 203 396 - -
Sebi779g00010 414 Gene3D Transferase(Phosphotransferase) domain 1 16 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi779g00010 Sebi-Chr779 254803 257229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi779g00010 24 77 Receptor kinase-like Gene Family AT5G07280 57.407 8.84e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Sebi779g00010 PK_Tyr_Ser-Thr 1.3e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi779g00010 - - tpra:123918107 465.692