Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi778g00008 ATGGCTCGAGCTTGTGATGATGTCGCTGAAGAAGCTATTACTGAAGATGATGATAAGAACCAGAACCTGCCTGTTCCTTCGTTCCGAAGATTGCTTGCATTGAACTTACCGGAGTGGAAGCAAGCGTGTTTCGGGTGTTTGAATGCGGTTCTGTTTGGTGCGGTTCAGCCTGTGTATGCATTTGCGATGGGATCGGTGATATCTGTTTATTTTCTGAATGATCATGATGAGATCAAGAAGCAAATCAGGATCTATGCGCTTTGTTTTCTAGGGTTGGCTCTGTTCTCATTGGCGTTTAATATCTTCCAGCATTATTGCTTTGCTTACATGGGAGAATACTTAACTAAAAGGATTAGAGAAAGAATGCTCTCCAAGATACTCACATTTGAAGTTGGATGGTTCGATCAAGATGAAAATTCCACTGGTGCTATTTGCTCTAGACTTGCCAAAGAAGCCAACGTGTTTTGGTTTGCAGGCATTGGGCTTGCTTGTTCCCAGAGCCTCACGTTTTGTACTTGGGCTTTAGACTTTTGGTATGGTGGTAAACTTATTTTTCATGGGTATATCAGTGCTAAGGCACTGTTTGAGACTTTTATGATCTTGGTGAGCACTGGGAGGGTTATTGCTGATGCTGGTAGTATGACCAATGACCTTGCCAAAGGATCAGATGCTGTGGGCTCAGTGTTTGCAATCTTAGATAGGTACACAAAAATTGAGCCTGATGACTTAGATGGGTACAAGCCTGAAAAGATAACAGGCAAGATAGAACTCCATGATGTTCATTTTGCATACCCAGCAAGGCCTAATGTAATGATCTTCCAAGGCTTCTCAATCAAAATTGATCCAGGCAAATCAACAGCATTGGTGGGGCAAAGTGGGTCTGGTAAATCAACAATCATAGGCTTAATAGAGAGATTTTATGATCCACTTAAAGGGACAGTGACTATAGATGGGAGAGACATAAAATCATATCACTTGAGATCACTGAGGATGCACATTGCACTTGTGAGCCAAGAGCCAACACTGTTTGGTGGGACCATAAGGGAGAACATTGCATATGGAGCATCTAGTAAGATTGATGAAACTGAGATCATAGAGGCAGCAAGGGCAGCCAATGCTCATGATTTCATAGCAAGCCTAAAAGATGGTTATGACACATGGTGTGGGGATAGAGGAGTGCAACTCTCTGGGGGTCAGAAGCAGAGGATTGCAATAGCTAGAGCTATATTGAAGAACCCTGAGGTGTTGCTGCTGGATGAAGCCACCAGTGCCCTTGATAGCCAGTCAGAGAAATTGGTGCAAGATGCTCTAGAAAGAGTTATGGTGGGGAGGACCAGTGTGGTGGTGGCTCATAGGTTGAGCACCATACAGAACTGTGATCTGATTGCTGTGTTGGATAAGGGAAGGGTGGTGGAGAAAGGGACCCACTCATCTTTATTGGGTAAGGGACCAAGTGGTGCTTATTACTCTCTGATAGCTACAAAGAAGAATGATGGGGCTATTGTGGTGATAGGTGCAAAGCAAATTGAGCTGAAGCAGATCAGGGAAAAGAGGGCCTAG 1560 0.4397 MARACDDVAEEAITEDDDKNQNLPVPSFRRLLALNLPEWKQACFGCLNAVLFGAVQPVYAFAMGSVISVYFLNDHDEIKKQIRIYALCFLGLALFSLAFNIFQHYCFAYMGEYLTKRIRERMLSKILTFEVGWFDQDENSTGAICSRLAKEANVFWFAGIGLACSQSLTFCTWALDFWYGGKLIFHGYISAKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAILDRYTKIEPDDLDGYKPEKITGKIELHDVHFAYPARPNVMIFQGFSIKIDPGKSTALVGQSGSGKSTIIGLIERFYDPLKGTVTIDGRDIKSYHLRSLRMHIALVSQEPTLFGGTIRENIAYGASSKIDETEIIEAARAANAHDFIASLKDGYDTWCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGRVVEKGTHSSLLGKGPSGAYYSLIATKKNDGAIVVIGAKQIELKQIREKRA 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi778g00008 519 CDD ABC_MTABC3_MDL1_MDL2 255 492 - -
Sebi778g00008 519 Gene3D ABC transporter type 1, transmembrane domain 2 243 IPR036640 GO:0005524|GO:0016020
Sebi778g00008 519 SMART AAA_5 282 515 IPR003593 GO:0016887
Sebi778g00008 519 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 83 153 IPR039421 -
Sebi778g00008 519 ProSitePatterns ABC transporters family signature. 395 409 IPR017871 GO:0005524|GO:0016887
Sebi778g00008 519 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 49 155 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi778g00008 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 492 IPR027417 -
Sebi778g00008 519 FunFam ABC transporter B family member 4 245 500 - -
Sebi778g00008 519 Pfam ABC transporter transmembrane region 44 153 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi778g00008 519 CDD ABC_6TM_Pgp_ABCB1_D2_like 32 238 - -
Sebi778g00008 519 Pfam ABC transporter 274 423 IPR003439 GO:0005524
Sebi778g00008 519 SUPERFAMILY ABC transporter transmembrane region 24 239 IPR036640 GO:0005524|GO:0016020
Sebi778g00008 519 Gene3D - 245 500 IPR027417 -
Sebi778g00008 519 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 255 492 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi778g00008 Sebi-Chr778 154602 156465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi778g00008 155 496 Calmodulin-binding Proteins AT2G36910 50.000 7.99e-109 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi778g00008 K05658 - gmx:100807709 623.624