Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi777g00004 ATGGGGGGTAACTCACCTTGTGCTTCTTGCAAATTGTTGAGACGCCGTTGCACACAGGAATGCATCTTTGCCCCTTATTTTCCTTCCGATGACCCTCGCAAGTTTGCCATTGTGCATAAGGTCTTTGGTGCTAGCAATATCAGCAAGATGCTCCAGGAGCTTCCGGTTCATCAAAGAGCAGATGCTGTGAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAGACCCGGTTTATGGATGTGTAGGAGCCATATCATACCTTCAAAACCAGGTTTCACAATTGCAAATGCAGCTTGCAGTGGCTCAGGCAGAGATTCTCTGTATCCAGATGCAGCAAGAGCCTACCTTACCCACACAGTTTGACCAAGATGACAAATCTCTGCATCTATCTGACAATAATAATATTAACTATGAAATCCTTCCCCACTATCTCAACTTTCCTTCATCTTCTTCCTCATCTTCCAATGTATTCCAAGACTCTGAGCCTCTTAAGAGAGAGTCTTTTTGGACTTAA 516 0.4399 MGGNSPCASCKLLRRRCTQECIFAPYFPSDDPRKFAIVHKVFGASNISKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQEPTLPTQFDQDDKSLHLSDNNNINYEILPHYLNFPSSSSSSSNVFQDSEPLKRESFWT 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi777g00004 171 Coils Coil 85 105 - -
Sebi777g00004 171 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Sebi777g00004 171 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Sebi777g00004 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi777g00004 Sebi-Chr777 58510 59725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi777g00004 3 171 AS2 family AT2G30130 67.196 1.09e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sebi777g00004 LOB 6.9e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi777g00004 - - gmx:100819419 289.271