Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi777g00002 ATGGGATTCCAGTACACATTTGCGGTGGAGGAGCATCAGGATAGTCTTTTTTGGTGCTATCCAAAGACGAAGTTGTTGAATGGGCATAGTGCACTCCCGGCAACAATCTTCGTGAAACTACCGAAAAACATAGCTTTGGTCGATGAGAACCACATGGAAAATAGTAGCTTGGTTTGTCCAAGAGAAGCAGTAACACAGCTTGAAAGATCATATGTCAAAGGCAAAGAAAATGGATCAGTGAAGTTCATGCTTTGGTTTGCGACTGCCTTGGGAGGAGTTGAGCTCGTGTGCTTCCTTTTGGTGTTGTGTTTCTTATTTAAGAATACTAGCAAACACTTGGGTCCTGACGGAGAGGGCTATGTTCTTGCAGCTGCAACGGGATTCAGGAAATTCAGTTACTCTGAACTGAAGCAAGCCACAAAAGGTTTCAGTCAAGAAATTGGAAAGGGTGCTGGAGGAATTGTATATAAAGCTATATTGTCGGATAAACAAGTTGCAGCAATAAAGCGATTGTATGATGCAAACCAAGGAGAGAGTGAGTTTCTTGTTGAAGTAGGCATCATTGGAAGGCTTAACCACATGAACTTAATTGGCATGTGGGGTTATTGTGTAGAGGGCAAGCAAAGGTTGTTGGTGTATGAGTACATGGAAAATGGTTCTCTAGCTCAAAATCTCTCATCAAATGCACTTGATTGGAGTAAGAGGTATAACATTGCTCTGGGAACTGCAAGGGGTTTGGCCTATTTACATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATATAAAGCCACAAAACATACTTCTTGACTCTGATTACCAACCCAAGGTAGCAGATTTTGGCTTGTCTAAGCTACTAAATCGTAACAATCTCAACAATTCAAGCTTCTCAAGGATAAGAGGAACAAGGGGTTACATGGCACCAGAATGGCTTTACAACTTGCCAATCACTTCCAAGGTGGATGTTTATAGCTATGGGATTGTTCTCTTGGAGATGATAACTGGAAGGAGTCCAACAACAGGTATTCAAATCACGGATGGAACAGAGCCACAAAACGAGAGGTTGGTAACATGGGTGAGGGAGAAAAGGAGGAAAGGATCAGAAGGGGCATCTTGGGTGGAACAAGTCGTGGACCCTGCTTTGGGATCAAATTATGATATGAAAAAATTGGAGATATTGGCAACAGTGGCTTTAGAATGTGTACTGGAAGATAAAGATGAGAGGCTCAGCATGAGTCAAGTTGTTGAGAGACTTCAAAGTCTTGAACATGATTCTTGA 1278 0.4218 MGFQYTFAVEEHQDSLFWCYPKTKLLNGHSALPATIFVKLPKNIALVDENHMENSSLVCPREAVTQLERSYVKGKENGSVKFMLWFATALGGVELVCFLLVLCFLFKNTSKHLGPDGEGYVLAAATGFRKFSYSELKQATKGFSQEIGKGAGGIVYKAILSDKQVAAIKRLYDANQGESEFLVEVGIIGRLNHMNLIGMWGYCVEGKQRLLVYEYMENGSLAQNLSSNALDWSKRYNIALGTARGLAYLHEECLEWILHCDIKPQNILLDSDYQPKVADFGLSKLLNRNNLNNSSFSRIRGTRGYMAPEWLYNLPITSKVDVYSYGIVLLEMITGRSPTTGIQITDGTEPQNERLVTWVREKRRKGSEGASWVEQVVDPALGSNYDMKKLEILATVALECVLEDKDERLSMSQVVERLQSLEHDS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi777g00002 425 Gene3D Phosphorylase Kinase; domain 1 115 215 - -
Sebi777g00002 425 SMART serkin_6 141 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi777g00002 425 PANTHER OS07G0415500 PROTEIN 18 422 - -
Sebi777g00002 425 Pfam Protein kinase domain 144 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi777g00002 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Sebi777g00002 425 Gene3D Transferase(Phosphotransferase) domain 1 216 425 - -
Sebi777g00002 425 FunFam S-receptor-like serine/threonine-protein kinase 110 215 - -
Sebi777g00002 425 FunFam Serine/threonine-protein kinase 216 425 - -
Sebi777g00002 425 ProSiteProfiles Protein kinase domain profile. 141 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi777g00002 425 ProSitePatterns Protein kinases ATP-binding region signature. 147 169 IPR017441 GO:0005524
Sebi777g00002 425 SUPERFAMILY Protein kinase-like (PK-like) 125 419 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi777g00002 Sebi-Chr777 29607 30884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi777g00002 131 422 Trihelix Transcription Factor Family AT5G38560 42.809 8.66e-71 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Sebi777g00002 Pkinase 6.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi777g00002 - - gmx:100806357 599.742