Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi776g00012 ATGAGACAGTGGTTGATCAACGTCGGAACAACAGCTTCCCTAATGTCTTTTCCCAGGTCAAGTAGAAGAGTTGGTAGTAGTAGAGTTGCAGTAGAAAATCGAGCCACATTACCACCACTGCCAATTCCTACAAAAAATTTGCAAAGGGGTGGAGTTAAGCCACTTTCAGGAAAACCATACTATCATGTGGTTCTTTCAAAATCACATGTTAGTCCTCCTTATGTAATGGGGCCGTCTGCCAAGTTATACTCAAAACTTCCTTCTCAAGTGGTCCCTACTGTTCTCAAATATGGAGGCAAGAGCTGGAAAATGACTTATAATGGACAAAGCACAGATCGCAAGAGGTTTACTTGCAAAGGCTGGGGAAAATTTGTTGAAGATAATTGTTTGAAGGTTGGAGACGCATGCATCTTTGAGCTCATGGAAAAGAGTACTGAAGAGAAAGTCATCTTCCAAGTTCAAATTCTTAGAGGTGACCTCCCATTCAAATTTCATGAAATTGGTGAGAGTGCAGAAAACCCAATTGTCTTTTGA 534 0.4101 MRQWLINVGTTASLMSFPRSSRRVGSSRVAVENRATLPPLPIPTKNLQRGGVKPLSGKPYYHVVLSKSHVSPPYVMGPSAKLYSKLPSQVVPTVLKYGGKSWKMTYNGQSTDRKRFTCKGWGKFVEDNCLKVGDACIFELMEKSTEEKVIFQVQILRGDLPFKFHEIGESAENPIVF 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi776g00012 177 SUPERFAMILY DNA-binding pseudobarrel domain 57 148 IPR015300 -
Sebi776g00012 177 ProSiteProfiles B3 DNA-binding domain profile. 99 159 IPR003340 GO:0003677
Sebi776g00012 177 CDD B3_DNA 59 157 IPR003340 GO:0003677
Sebi776g00012 177 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 58 165 IPR044837 -
Sebi776g00012 177 Gene3D - 51 159 IPR015300 -
Sebi776g00012 177 Pfam B3 DNA binding domain 91 151 IPR003340 GO:0003677
Sebi776g00012 177 SMART B3_2 61 154 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi776g00012 Sebi-Chr776 255954 259546 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi776g00012 B3 8.5e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi776g00012 - - tpra:123884363 176.407