Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi776g00002 ATGGTGTATGAGGCAAATGCAAGGGTGAGAGACCCTGTGTATGGGTGTGTAGGGGCCATTTCATCCCTTCAGCAACAGATTGATGTGCTACAGACCCAATTGGCAGTGGCCCAAGCTGAGGCAGTGCACCTTAGGGTGCGCCAAACTGCATCACTCTGGAACCAAGGTCATAGCCCAACCTATAGTGGCTCTCCATCATCCAAGATCATTGAATCACAAGCCAAGCCTATTTTTGACATGGACATGGTGGTGGACCACACTGGCTATGTTTACAAGGAAGATGCACCTGTTGGCATTTACTTAGTTTTTACATAA 315 0.4794 MVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASLWNQGHSPTYSGSPSSKIIESQAKPIFDMDMVVDHTGYVYKEDAPVGIYLVFT 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi776g00002 104 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 55 - -
Sebi776g00002 104 ProSiteProfiles LOB domain profile. 1 41 IPR004883 -
Sebi776g00002 104 Coils Coil 20 40 - -
Sebi776g00002 104 Pfam Lateral organ boundaries (LOB) domain 1 38 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi776g00002 Sebi-Chr776 107857 108629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi776g00002 1 87 AS2 family AT1G16530 49.451 2.18e-20 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sebi776g00002 LOB 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi776g00002 - - pavi:110748098 142.895