Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi775g00008 ATGGCGGAGACGATCTCTCCTATGGACATCGACGCCGACGACCAAACTTACTCTGCGAGGCCTGATAAGGGCAAAAGTGTCCTCGTCGCCGGTAACCCTCCCGGCGGCGCCAAGGCGATTCCTTGGGTCGAAAAGTACCGTCCTCAGTCCCTCGACGACGTCGCCGCTCACCGTGACATTGTCGATACCATTGATAGGCTGACCACTGAGAACAGATTACCCCATCTTCTATTGTATGGCCCTCCTGGCACGGGCAAAACATCAACTATTCTCGCTGTGGCACGCAAATTATATGGTGCACAATACCACAATATGATTTTGGAGCTCAATGCTTCGGATGATAGAGGAATTGATGTTGTACGACAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGGTTGTCTGCATTAAGCTGTGAGTTCCTATTTCTTGTACCAGTCCATTGGTCAATTCAGAGCGTTAAGTCCTCTGTAAAACTGGTCTTGTTAGATGAAGCTGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGCACCAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATTCCAGCACTTCAATCAAGATGCACTCGGTTTCGGTTTGCCCCTCTTGATGTTGTACATGTCACTGAAAGATTGAAACATGTTATTAAGGCTGAAGGGCTTGATGTTGAAGATAGTGGCTTAGCAGCTCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTCTGAATATTCTTCAGTCAACCCATATGGCCTCTCAGCAGATAACAGAAGAAGCTGTTTACCTGTGCACCGGAAATCCATTGCCCAAAGACATTGAGCAAATATCTTACTGGCTTCTTAATGAACAATTTGCAGATAGCTTTAAAAGAATATATGAAATCAAGACAAGGAAAGGATTGGCCGTGGTAGATATTGTCAGAGAAGTGACAATGTTTGTTTTTAAGATTAAGATGCCTCCAGCTGTTCGGGTACAGTTGATGAATGATTTGGCAGATATAGAGTACAGATTAAGTTTTGGGTGCAACGATAAACTCCAGCTTGGATCAGTCATTGCTTCTTTTACACGCGCTAGATCTGCCCTGGTTGCAGCTACTACCTAA 1152 0.441 MAETISPMDIDADDQTYSARPDKGKSVLVAGNPPGGAKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGLSALSCEFLFLVPVHWSIQSVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDVVHVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIYEIKTRKGLAVVDIVREVTMFVFKIKMPPAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAATT 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi775g00008 383 FunFam Replication factor C subunit 5 284 381 - -
Sebi775g00008 383 Gene3D - 36 218 IPR027417 -
Sebi775g00008 383 Pfam Replication factor C C-terminal domain 284 370 IPR013748 -
Sebi775g00008 383 Gene3D - 222 283 - -
Sebi775g00008 383 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 41 365 - -
Sebi775g00008 383 SUPERFAMILY post-AAA+ oligomerization domain-like 284 374 IPR008921 GO:0003677|GO:0006260
Sebi775g00008 383 CDD HLD_clamp_RFC 219 281 - -
Sebi775g00008 383 CDD AAA 60 218 - -
Sebi775g00008 383 FunFam Replication factor C subunit 5 221 283 - -
Sebi775g00008 383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 277 IPR027417 -
Sebi775g00008 383 Gene3D - 284 381 - -
Sebi775g00008 383 FunFam Replication factor C subunit 5 35 219 - -
Sebi775g00008 383 MobiDBLite consensus disorder prediction 1 23 - -
Sebi775g00008 383 SMART AAA_5 72 222 IPR003593 GO:0016887
Sebi775g00008 383 Pfam ATPase family associated with various cellular activities (AAA) 76 216 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi775g00008 Sebi-Chr775 163960 169516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi775g00008 1 381 Core DNA Replication Machinery Family AT1G77470 75.064 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi775g00008 K10756 - gmx:100782652 649.047