Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi775g00002 ATGATGCCAGACGTGATAGCATATGCTAAAGATGAGGTCGAGAATCGTTGTTCTGTTTTCCGCACTAAAAGTGGGAAGTTTCATTTATTCAATTTGGTTTTGGATATTAGAATTCAAGATGAACTAGATGATGATATTATCAACATGGTCATGGAGGAGTCCATGAGAGAGACCCAAATGGTTCCTGCATCCAAGATTGCCATTGAATCCCTCCAGAAAGTGAAGCTACAAGAAGGTGCTACCATGGAGAGATGTAGTATTTGTCTAATGGAGTTCGATGTTGGCACAGAGGTTTCATCAATGCCTTGCAAGCATGTTTATCACCATGAATGCCTTGTTCAGTGGCTTAAAACGAGTCATGTGTGTCCTTTGTGTCGCTATCCCATGCCTACTTCAATAAGTGTGATTGATTAA 414 0.4058 MMPDVIAYAKDEVENRCSVFRTKSGKFHLFNLVLDIRIQDELDDDIINMVMEESMRETQMVPASKIAIESLQKVKLQEGATMERCSICLMEFDVGTEVSSMPCKHVYHHECLVQWLKTSHVCPLCRYPMPTSISVID 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi775g00002 137 SMART ring_2 85 125 IPR001841 -
Sebi775g00002 137 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 44 130 - -
Sebi775g00002 137 Pfam Ring finger domain 84 126 IPR001841 -
Sebi775g00002 137 SUPERFAMILY RING/U-box 84 132 - -
Sebi775g00002 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 132 IPR013083 -
Sebi775g00002 137 ProSiteProfiles Zinc finger RING-type profile. 85 126 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi775g00002 Sebi-Chr775 35359 35772 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi775g00002 45 130 C3H Transcription Factor Family AT1G18760 40.000 1.22e-20 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi775g00002 - - aprc:113870408 171.785