Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi772g00028 ATGGCTATATCAGATACTAGGCAAAGGAACATGCCAGCGATGAGTGATAGAGAAAAGGGTCAACCCCTGGCATATCCTGAAGCTGTTCACTTAACCCATCCATCTAACCCACAATTTAGAGGAGAGGTGGATGACAAGTACCAATACTCAATTGAGAACACAGACAACAATATGTTTGTGAGCACCCACTATGCTGGCAAGGAGGTCACCATGTCATTTCAAGAAGGAGAGACTTATAAAAAGGTTTTTGGCCCGGTTTTTGTCTACCTTAATTCTGCATCAAGTGATGTCCATTTCCAATCTCTATGGTCAGATGCTGTGCAACAGCTATCCAAAGAAATCAAAAGCTGGCCTTATGATTTCCCCAAATCAAAATATTTCTTTCCATTCAATCAACGAGGAATAGTAGCAGGACATTTACAAGTCCAAGAGCGGGGAGAGAGTTCTAAATATGCTAAAAATGCTTATGTTGGGCTAGCTTTGCCTGGAGATGCAGGATCATGGCAAAAGGAAAGCAAGGGTTATCAATTCTGGACTCGAACTGATGGAAATGGATATTTTGTGATAAAAATGTTGTACCTGGGAAATACAACTTATCGCTCAGCTGCAGAATTCTATGTACCAGACCCTTACCCTACACTCATGAACAAGTTATACAACAACGATAACAAAAACAAGTTTAGGCAATATGGGTTGTGGGAACGTTATGCTGATATGTATCCAAATCATGATCTCATTTACACGGTTGGTGTTGACAACTATAAAAAGGATTGGTTTTTCGCTCATGTGACCAGGAGCACAGGACATAATACATTCCAACCAACCACATGGAAGATTATATTTAAACTTCAAAATAGCATTTTGAGAGGAAACTACACACTGCAACTGGCTCTGGCATCCGCCTCTAAATCGGAACTGCAGGTTTGGTTCAATGGACAGAGTGCTAATCGTCCCCAGTTCACAACAGGGGTAATAGGCGGAGATAGTGTGATAGCAAGGCATGGCATCCATGGATTGCATAGGCTGTATAGCATAGATGTAGGTAGTGATCATTTGGTGAAAGGAATGAACACCATCTATCTGAGGCAGTCAAGAGCACAAGATCCTTTCCAAGGAGTTATGTATGATTATATTAGCTTAGAAAGTCCTCCAACTCCAATTACTTGA 1167 0.4113 MAISDTRQRNMPAMSDREKGQPLAYPEAVHLTHPSNPQFRGEVDDKYQYSIENTDNNMFVSTHYAGKEVTMSFQEGETYKKVFGPVFVYLNSASSDVHFQSLWSDAVQQLSKEIKSWPYDFPKSKYFFPFNQRGIVAGHLQVQERGESSKYAKNAYVGLALPGDAGSWQKESKGYQFWTRTDGNGYFVIKMLYLGNTTYRSAAEFYVPDPYPTLMNKLYNNDNKNKFRQYGLWERYADMYPNHDLIYTVGVDNYKKDWFFAHVTRSTGHNTFQPTTWKIIFKLQNSILRGNYTLQLALASASKSELQVWFNGQSANRPQFTTGVIGGDSVIARHGIHGLHRLYSIDVGSDHLVKGMNTIYLRQSRAQDPFQGVMYDYISLESPPTPIT 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi772g00028 388 CDD RGL4_M 132 190 IPR029413 -
Sebi772g00028 388 Pfam Polysaccharide lyase family 4, domain II 153 193 IPR029413 -
Sebi772g00028 388 CDD RGL4_C 200 381 - -
Sebi772g00028 388 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 57 - -
Sebi772g00028 388 SUPERFAMILY Galactose-binding domain-like 200 381 IPR008979 -
Sebi772g00028 388 Gene3D - 214 381 - -
Sebi772g00028 388 Pfam Polysaccharide lyase family 4, domain III 200 380 IPR029411 -
Sebi772g00028 388 Pfam Rhamnogalacturonate lyase family 1 43 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi772g00028 Sebi-Chr772 379969 382558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi772g00028 1 384 Polysaccharide Lyase AT4G24430 44.191 5.44e-131 384