Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi772g00027 ATGAAGGTGGTAATAGCAGAGATGAGGAACGGGGTAATTTTCTTCAGAATGGCTGTACTACTGCTCTGCTTCTCGCTCGCTTCCTCTTCTGAAAATACCTCATTTAGGGTAAACAAAAAGGAAATCATGAGTTCTTCCCCTTTCAGAAGAGGTTTAAGGGAGGCCAATTGCCGAGAATCGACGCCTAATCATTCTCCAGTCAAACTCAATACAGAAAAGCCTAACCAGGTTGTGATTTACAACAGCATCGTTTCCATCAATTTATCAAGTCCAGTGGGCGATGTCATTGGAATATCACATTCGGGAATTGAAAATGTATTTGACCCTCGAGCTGACATAAATGATAGAGGGTACCTGGACGTTGTTTGGACAGAACCAGGAAAACCTGGCGCCTTTCAAAGAATCCACGGGACAAATTTCTCAGTCATAACTGCCAACGAGAATATAGTGGAAGTTTCATTTTTATCAACATGGACACCAGGCTCAAGTGTCCCCCCCATAAACATAGACAAAAGGTATATATTGAGAAGGGGCGATTCCGGGTTTTATTCTTACGTAATATTTGACCGACCAGAAGGATTCCCTGCAATGACGGTTTATCAAATTAGGATTGTTTTCAAGCTCAGCGACAAAAGGTTCCACTATATGGCTATATCAGATACTAGGCAAAGGAGCATGCCAACGGCGATTGATAGAAAAACAGGTAAAGTCCTGGCGTATCCTGAAGCTGTTCTCTTAACCCATCCATCCAACTCAAAATTTAGGGGAGAGGTGGATGACAAATACCAATACTCCATTGAGAACGCAGACAACACTGTTAATGGCTGGATTACCACAGATAATTCTAAAGAGCACGTGGGTTTCTGGATCATAACACCCAGTAATGAGTTCCGCAATGGTGGGCCCATTAAGCAAGACCTTACCTCTCATGTTGGCCCTGTTGCCCTCTCTCTATCCAAAGAAGTTAAAAGCTGGCCTTATGATTTCCCCAAATCAAAAGATTTCCTTCCATCCAATCAACGAGGAGCAGTAGCAGGGCGTTTAAAAGTCCAAGAGCGGGGAGAGAGTTCTAAATATGTTAAAAATGCTTACATTGGGCTAGCTTTGCCTGGAGATGCAGGATCATGGCAAACAGAAAGCAAGGGTTATCAATTCTGGACTCGAACAGATGAAAATGGATATTTTATGATTAAAAATGCTGTACCTGGGAAATACAACTTGTATGCATGGGTTCCTGGCTATATTGGAGATTACAAATATAATGCTACATTCACCATCACACCAGGACGGTCCATCAACATGGGCTCACTTGTATATAGTCCTCCAAGAAATGGTCCAACTCTTTGGGAAATTGGCATCGCAGATCGCTCAGCTGCAGAATTCCATGTGCCAGACCCTTGCCCTAAACTCTTGAACTACTTATACAAGAACGATCAAAGAGACAAGTTTAGGCAATACGGGTTGTGGGAACGTTATACTGACTTATATCCAAACAATGATCTCGTTTACACAATTGGTGTTAACAACTATGAAAAGGATTGGTTTTTCGCTCATGTTACCAGTGGTAATTCTCCTCATTTCACAACAAAGCTAATTGGTGGAGACAATGTGATAGCAAGGCACGGCATCCATGGATTACATAGATTGTATAGCATAGATGTAGGTAGTGATCTTTTGGTAGAAGGAAATAACACCCTCTATTTGAGGCAGTCAAGAGCCGCAGGTCCTTTCCAAGGGGTTATGTATGATTATATCCGCTTAGAAAGTCCTCCAACTCCACCTACTTAA 1788 0.4223 MKVVIAEMRNGVIFFRMAVLLLCFSLASSSENTSFRVNKKEIMSSSPFRRGLREANCRESTPNHSPVKLNTEKPNQVVIYNSIVSINLSSPVGDVIGISHSGIENVFDPRADINDRGYLDVVWTEPGKPGAFQRIHGTNFSVITANENIVEVSFLSTWTPGSSVPPINIDKRYILRRGDSGFYSYVIFDRPEGFPAMTVYQIRIVFKLSDKRFHYMAISDTRQRSMPTAIDRKTGKVLAYPEAVLLTHPSNSKFRGEVDDKYQYSIENADNTVNGWITTDNSKEHVGFWIITPSNEFRNGGPIKQDLTSHVGPVALSLSKEVKSWPYDFPKSKDFLPSNQRGAVAGRLKVQERGESSKYVKNAYIGLALPGDAGSWQTESKGYQFWTRTDENGYFMIKNAVPGKYNLYAWVPGYIGDYKYNATFTITPGRSINMGSLVYSPPRNGPTLWEIGIADRSAAEFHVPDPCPKLLNYLYKNDQRDKFRQYGLWERYTDLYPNNDLVYTIGVNNYEKDWFFAHVTSGNSPHFTTKLIGGDNVIARHGIHGLHRLYSIDVGSDLLVEGNNTLYLRQSRAAGPFQGVMYDYIRLESPPTPPT 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi772g00027 595 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 523 591 - -
Sebi772g00027 595 CDD RGL4_N 75 317 - -
Sebi772g00027 595 CDD RGL4_M 340 437 IPR029413 -
Sebi772g00027 595 Pfam Polysaccharide lyase family 4, domain III 528 587 IPR029411 -
Sebi772g00027 595 Pfam Polysaccharide lyase family 4, domain III 447 521 IPR029411 -
Sebi772g00027 595 FunFam Rhamnogalacturonate lyase B 337 434 - -
Sebi772g00027 595 Gene3D - 336 435 - -
Sebi772g00027 595 SUPERFAMILY Starch-binding domain-like 336 434 IPR013784 GO:0030246
Sebi772g00027 595 Gene3D - 69 325 IPR014718 GO:0030246
Sebi772g00027 595 CDD RGL4_C 449 588 - -
Sebi772g00027 595 Pfam Polysaccharide lyase family 4, domain II 361 433 IPR029413 -
Sebi772g00027 595 Pfam Rhamnogalacturonate lyase family 65 258 IPR010325 -
Sebi772g00027 595 SUPERFAMILY Galactose-binding domain-like 444 588 IPR008979 -
Sebi772g00027 595 SUPERFAMILY Galactose mutarotase-like 71 319 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi772g00027 Sebi-Chr772 365058 369718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi772g00027 65 590 Polysaccharide Lyase AT1G09890 46.614 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi772g00027 K18195 - gmx:100781089 732.25