Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi772g00018 ATGGGAAGAGGGAAGATTGTGATTCGAAGGATCGACAATTCTACGAGCAGGCAAGTGACTTTCTCAAAAAGGAGAAAGGGATTGATCAAGAAAGCGAAAGAGCTCGCAATCCTCTGTGATGCACAAGTTGGACTTGTCATCTTCTCCAGCACGGGAAAGCTTTATGAATATGCAAGCAACAGTCTGGTTCTGTATGCTCTTGTCCTTATTGCAAGTCTATCTGTTATCTCTGTACCTGACTGA 243 0.4362 MGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYASNSLVLYALVLIASLSVISVPD 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi772g00018 80 Gene3D - 13 69 IPR036879 GO:0003677|GO:0046983
Sebi772g00018 80 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sebi772g00018 80 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sebi772g00018 80 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi772g00018 80 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sebi772g00018 80 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
Sebi772g00018 80 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi772g00018 80 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi772g00018 80 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi772g00018 80 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Sebi772g00018 80 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi772g00018 Sebi-Chr772 312717 313071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi772g00018 1 62 MADS-box Gene Family AT4G37940 87.097 6.31e-35 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi772g00018 SRF-TF 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi772g00018 K09264 - gmx:100795778 115.931