Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi772g00008 ATGGAGCTTTCTCAACTTGGTTTTCTGGAGGAACTACTTGCTCCAAGAAAAGACACTTGGAATGCTTTGTCCACTGGGTTGAATGAGTTACTCCCTAGTGGTTGGAGCTTTGACTCTTTTGAAGAGAACCCAGCTTTGGCTACTTTAAATCCCTCATTTGCTGCATTTTCAACCCCAATAGACCATAGATTTGAATGTCCTTATGGCAGTGAAGCAGCATACCCTTATGTTGATGGGTTCACAATGCCAGAGCTTGATTCATCATACACCAGAAATGATGAGTCAGCTCCAGTTTTACCACAAGAAGATAACCCATCAGTGGAGGATATTGATGAAGAGTTTGGCTTTCTGGGCAGTGATAAGCAGTGTTTGGAACAAATTAAAAATAGCTGCAAAATTGAGGAACAAGTTACAGAGATTCCAGTCTTCAACATGGGCTTATGTGGAGATAAAAAGCCCAAATCCAAAAGGTTAGAAGGACAGCCTTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGCCTCAATGACCGGCTTTCCATGCTAAGGTCAATAGTCCCTAAGATCAGCAAGATGGATAGGACATCCATTCTTGGAGATACCATTGATTACATGAAAGAGCTTCTAGAAAGGATTGGGAAGTTGCAAGAAGAAATGGAGGAGGGGACTAATCAGATAAATCTCATGGGCATTTCTAAGGAGCTAAAGCCAAATGAAGTAATGTTTGATGTTGAGAGGAGAGACCAGGACATGAGGATCAGCATCTGCTGTGCCACAAAGCCAGGATTATTACTGTCAACAGTGAACACCTTAGAAGCATTAGGCCTTGAGATTCACCAGTGTGTTATAAGCAGCTTCAGTGATTTTTCATTGCAAGCATCTTGCTCAGAGGCAGATGGGCAGAGAAATTGTATGAGCGCTGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGGAGATGTCTCTAG 981 0.423 MELSQLGFLEELLAPRKDTWNALSTGLNELLPSGWSFDSFEENPALATLNPSFAAFSTPIDHRFECPYGSEAAYPYVDGFTMPELDSSYTRNDESAPVLPQEDNPSVEDIDEEFGFLGSDKQCLEQIKNSCKIEEQVTEIPVFNMGLCGDKKPKSKRLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEMEEGTNQINLMGISKELKPNEVMFDVERRDQDMRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFSDFSLQASCSEADGQRNCMSAEEIKQALFRNAGYGGRCL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi772g00008 326 Gene3D - 152 226 IPR036638 GO:0046983
Sebi772g00008 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Sebi772g00008 326 Pfam Helix-loop-helix DNA-binding domain 166 209 IPR011598 GO:0046983
Sebi772g00008 326 Coils Coil 206 226 - -
Sebi772g00008 326 CDD ACT_UUR-ACR-like 254 315 - -
Sebi772g00008 326 SMART finulus 166 215 IPR011598 GO:0046983
Sebi772g00008 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 228 IPR036638 GO:0046983
Sebi772g00008 326 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 129 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi772g00008 Sebi-Chr772 140127 141530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi772g00008 150 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 66.480 7.71e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi772g00008 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi772g00008 - - gmx:100806571 569.696