LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi76g00059	ATGGACAACAACTACTCACCTCCTCAACCCCAAGAAACCAAACCCACCGTCACCACCGTTCCAACCTCCACTCCCAGTGAAACATCTAACAGTACCAACAGTAGCAGCAGTTGCAGCATCACCAACAACCGTAAATGCAAAGGCAAAGGTGGCCCTGACAATAACAAATTTAGATACCGTGGTGTGAGGCAACGAAGCTGGGGTAAATGGGTTGCTGAGATCCGAGAGCCACGATTCGGTTTCACCTTCTCCTCCGGTTCTCATCTTTTCAACACCGTAACCGCCACTTCGGGATTCGTGCCGATTGGGGTTTATAATAACGGCTTCATCCCACAGGTGATGTATCCAGTTGATAATAACAACTTCCATCGCTCTCACGAAGTGGTGCAACAACATCATCGAGAATCTGATTCTGGTAGTGCGGTGGTGGATCCGGATCCAACGACGTCGTTGGGGGTTGTAGGGACAGTGGGTCTTGGTTCTCCGTCTATTTGGCCTTTGACGAATGAGGAGGATTACCCTGCTTGCCTCTGGGATTATAATGATCCTTTCTTCTTTGATTTTTAA	567	0.485	MDNNYSPPQPQETKPTVTTVPTSTPSETSNSTNSSSSCSITNNRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRFGFTFSSGSHLFNTVTATSGFVPIGVYNNGFIPQVMYPVDNNNFHRSHEVVQQHHRESDSGSAVVDPDPTTSLGVVGTVGLGSPSIWPLTNEEDYPACLWDYNDPFFFDF	188

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi76g00059	188	Gene3D	AP2/ERF domain	57	106	IPR036955	GO:0003700\|GO:0006355
	Sebi76g00059	188	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	32	78	-	-
	Sebi76g00059	188	MobiDBLite	consensus disorder prediction	1	44	-	-
	Sebi76g00059	188	ProSiteProfiles	AP2/ERF domain profile.	58	132	IPR001471	GO:0003700\|GO:0006355
	Sebi76g00059	188	MobiDBLite	consensus disorder prediction	1	57	-	-
	Sebi76g00059	188	SUPERFAMILY	DNA-binding domain	58	78	IPR016177	GO:0003677
	Sebi76g00059	188	SMART	rav1_2	58	107	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi76g00059	Sebi-Chr76	783851	784879	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi76g00059	44	78	AP2-EREBP Transcription Factor Family	AT2G40220	94.286	4.37e-17	75.9

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi76g00059	K09286		-	egr:104423338	105.916

Showing 1 to 1 of 1 entries