Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi76g00050 ATGAGCAAGAACGTGAAATTCAGTCGGCTCAGGGATCACTGTGAAGCTTTGTGCTTTTTGGCGGCGTGCTTGTTGTTTCTGAACTTGGGTTTGTGCTGTTCTTTGAATGAAGAAGGTAACGCTCTTTTGAAATTGAAGCAGAGAATAATGAGTGACCCTTTTGATGCTCTGTCAAATTGGATTGATGATGAAGCAGTTGTTGACCCGTGTAATTGGTTCGGAGTTGAGTGCTCTGATGGAAGAGTTGTGGTCTTGAATTTGAAAGATCTCTGCCTTGGAGGAACTCTAGCACCAGAGCTTGTGAACCTTATTCACATAAAGTCTATCATATTGAGGAACAACTCTTTCTCTGGGACCATCCCTGAAGGAATTGTAGATTTGAAAGAATTGGAGATTTTGGATTTGGGATACAACAACTTCAGTGGAGAAGTACCTGAAAATCTTGGGAGTAATATCTCCCTGGCAATCCTTTTGCTGGACAACAATGAGCTTCTTGTTGGTTTCTCTCCCGAAATCAATGAACTGAAGATGCTTTCTGAATGTCAAGTAGATGAAAACCAGCTAATTAATGCAGATAAGCTACCAGCTTGTAAAGAAAGATCCATGACATGGCATGTTGGTCAAAATAAAGTTACTCGGAGCCTACTGGAAAGTCATTCCAAATATCATCGTTTGCGAAAATATCCTCCTCCACATCCAGGCCCTCTTAATCGTGGGGTTAATCCACCTCTGAATAGCCCTTCTCCTTCTGGTTCCCCACCACCAGTACCAAAGTCAGCTCCATCTAGTCAAAATGATTCTCCTAATGTCATGTCTAAACCAGGTTCTGGAGCACCATCTAAGGCTCCATCTAAAAGCACCTCATCAAAGAAACATGCAATCCCTATTTTGGCTGGAGTTACAGGTGGTGCTGTATTTCTTATTTTTTCAAGCATTGGTATATATCTTTGTATAACCAACAAGGTAGCTAATGTCAGACCTTGGGCTACTGGACTAAGTGGACAGCTTCAGAAGGCATTTGTGACTGGTGCGCCAAAACTAAAGAGATCAGATCTTGAAGCAGCATGTGAAGATTTTAGTAATGTAATTGGTAATTCACCTATTGGTACATTGTACAAAGGAACTTTGTCTAGTGGCGTTGAAATATCTGTAGCTTCTCTTCCGGTGACATCATCCAAGAATTGGTCAAAGACTTTAGAAGCTCAATTCAGGAAGAAGATAGATACATTATCAAAAGTGAACCACAAGAATTTTGTCAATCTTATTGGATATTGTGAAGAAGAGGAGCCTTTCACCAGAATGTTGGTTTTTGAATACGCCCCAAATGGAACACTCTTTGAGCACTTACACATAAAAGAAGCTGAGCACTTGGATTGGGTAACAAGGCTTAGAGTTGCAATGGGCATGGCTTACTGCCTGCAACATATGCACCAGTTGGACCCTCCTTTGACTCTTACCAACTTGAATTCTTCAGCTGTCTACCTTACTGATGACTATGCAGCCAAAATCTCAGACATGAGTTTCTCTATTGAAACAGCTTCATCTGATCAGACAAAAGCTGGGGCTAGAAAAAACACTGACATGCCATTAGCAAGTCCAGAAAGTAATGTCTATAGCTTTGGTGTTTTATTATTTGAAATGGTCACTGGTCGTCTCCCTTATTCAGCAGATAATAGCTCACTTGAAAACTGGGCCTCACACTATTTACAAGCAGAGGACCAGCAACCCCTCAAAGAAATGGTGGATCCAATTCTAGCATCTTACCAAGAAAATCAGCTGGAACAAGTTGCTGCATTGATTAAATCTTGTGTGCATCCTGAGTCAGAGCAGAGACCAACAATGAAAGAAGTGAGTGAGAGATTGAGAGAGATAACAAAAATAACACCTGAATCAGCAGTTCCAAAACTTTCTCCACTTTGGTGGGCAGAGGTTGAGATTTCTTCTGTAGAAGCACGCTGA 1959 0.4125 MSKNVKFSRLRDHCEALCFLAACLLFLNLGLCCSLNEEGNALLKLKQRIMSDPFDALSNWIDDEAVVDPCNWFGVECSDGRVVVLNLKDLCLGGTLAPELVNLIHIKSIILRNNSFSGTIPEGIVDLKELEILDLGYNNFSGEVPENLGSNISLAILLLDNNELLVGFSPEINELKMLSECQVDENQLINADKLPACKERSMTWHVGQNKVTRSLLESHSKYHRLRKYPPPHPGPLNRGVNPPLNSPSPSGSPPPVPKSAPSSQNDSPNVMSKPGSGAPSKAPSKSTSSKKHAIPILAGVTGGAVFLIFSSIGIYLCITNKVANVRPWATGLSGQLQKAFVTGAPKLKRSDLEAACEDFSNVIGNSPIGTLYKGTLSSGVEISVASLPVTSSKNWSKTLEAQFRKKIDTLSKVNHKNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHIKEAEHLDWVTRLRVAMGMAYCLQHMHQLDPPLTLTNLNSSAVYLTDDYAAKISDMSFSIETASSDQTKAGARKNTDMPLASPESNVYSFGVLLFEMVTGRLPYSADNSSLENWASHYLQAEDQQPLKEMVDPILASYQENQLEQVAALIKSCVHPESEQRPTMKEVSERLREITKITPESAVPKLSPLWWAEVEISSVEAR 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi76g00050 652 ProSiteProfiles Protein kinase domain profile. 357 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi76g00050 652 Pfam Leucine rich repeat N-terminal domain 36 78 IPR013210 -
Sebi76g00050 652 SUPERFAMILY L domain-like 39 221 - -
Sebi76g00050 652 SUPERFAMILY Protein kinase-like (PK-like) 351 641 IPR011009 -
Sebi76g00050 652 Gene3D Transferase(Phosphotransferase) domain 1 440 633 - -
Sebi76g00050 652 FunFam Inactive receptor-like serine/threonine-protein kinase 331 439 - -
Sebi76g00050 652 FunFam Nuclear pore complex protein NUP107 35 193 - -
Sebi76g00050 652 Gene3D Phosphorylase Kinase; domain 1 330 439 - -
Sebi76g00050 652 Gene3D Ribonuclease Inhibitor 33 224 IPR032675 -
Sebi76g00050 652 PANTHER PROTEIN MALE DISCOVERER 2 11 650 - -
Sebi76g00050 652 MobiDBLite consensus disorder prediction 224 290 - -
Sebi76g00050 652 MobiDBLite consensus disorder prediction 229 261 - -
Sebi76g00050 652 MobiDBLite consensus disorder prediction 262 290 - -
Sebi76g00050 652 Pfam Protein tyrosine and serine/threonine kinase 360 621 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi76g00050 Sebi-Chr76 674383 678786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi76g00050 17 621 Receptor kinase-like Gene Family AT5G16000 26.266 1.48e-47 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Sebi76g00050 PK_Tyr_Ser-Thr 1.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi76g00050 - - gmx:100820416 926.391