Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi76g00049 ATGGTTTTGCCAACCGACTTCATTGTTGACATTGATTCATCCAAAGAATCGTGGCATATTGTTGCGAGAGTAGTTCGTTTGTGGAAAATTCCCAATTTCCACAATGCAAAAATCTCCCTTGCTTTGGAGATGGTTCTTTGTGATGAGAGGGGTGGAAAAATTCACGCTGTTGTCCGAAGAACTCTGGTGTACAAATTTCAATCCACCCTAATTGAGGGAGCTGCTTATTCCATTTCAAATTTTGGTGTTGGTGAAAATTCTGGTGAGTTCAAGTACTCTATGCATTTGTACAAGGTGAACTTCGAGTACCATACAAGAGTTGTTTTGATGAGGGACTGTACTATTCCCCGATTTCAATTTTCATTTGTGTCTTTGGCGGATGTAATGGCACCTTCTTTTGACAACAGTTATTTAGTCGATGTAATCGGAGTGTTGACTGGTATAGGTACTGAGAAGGAGTATGAGAGGAATCGAAAAAAATATCGCATGAATGTCATGGAACTGGAAATAGATGGGTCGAAAATAGAATGTGCTCTGTTTGAAAATTACCTTGATGATTTGAATGCATTCCTTGCTTCTGGTAATACTACAAATGTGGTTGTTGTAGTACAACTTGCAAAAGTCAAGCCATTCAAAGGGAAAGTGTCTTTGCAAAATTCTCTCCATGCTACTAAGTTGATCTTCAACCCTGACTTTGACAAAGCTGTGGAATTAAGGAAAAGGCTTGAAGAAAACACTGAGTCTGTCTCACAACCCTTAAGTCAAATTGCTGAAGTTCCTAAGTTGACTATGGAGGAGGAGTTCTTGACTCATACTGTGATGAAGACTATTGAGGAGCTAAAGGACTCTAATGAGGAATGTTGTTGCATTGTCATGGCTACGATCAAACATCTTATTGAAGGAGAAGACTGGTGGTATAAGGCTTGCAGATGTGGGACTTCTATTTTTTCTGATTCAAAAATGTATTATTGTGGAACATGTAACAAGCATATAGTTTCTGTTTTCTATAGGTATCGTCTGAAGGTTCGTGAGATTGACTCAACTGATTCTGCAACATTAGTAATCTTTGATCGAGATGCTGCATCTCTTTTGGACATAAGTTGTTCTGATTTGTTGGAGTCTACTGCGCAGCCCAATGATAAGAGTTTCCCTGCTGAAATATCTGCATTGGTTGATCAAACTTTTCTGTTCAAAGTTGAGAATAAGATTGTCTCCAACTCTCGGTTTGAGACATCTTACAAAGTTAGGAGGGTGTGCTCGGATAGTGAACTGATTCAACAATTTAAGGACATTCATTTCTCCAAAAAGACCGATGACTCTTTGGACTATGTCATTTCTGATAGCCAACAATTAGTTGGAGTTGTTTTATCTACTGATCTGCCAAAACAGTCAATGATGATGGAGATAATACTGTTTTTAATGGGATCTGATGATGGACAAGGACTGACAATGGATTCTGACTCTGTCACTCCATGTAAAAGAAATTCTGCTGAATGTACTGATGATCCAATTGATGCCTCATCATCTGTCAAGTTGAAAAAGGTTATCAAACAAGAGAAAGAGTGA 1566 0.3851 MVLPTDFIVDIDSSKESWHIVARVVRLWKIPNFHNAKISLALEMVLCDERGGKIHAVVRRTLVYKFQSTLIEGAAYSISNFGVGENSGEFKYSMHLYKVNFEYHTRVVLMRDCTIPRFQFSFVSLADVMAPSFDNSYLVDVIGVLTGIGTEKEYERNRKKYRMNVMELEIDGSKIECALFENYLDDLNAFLASGNTTNVVVVVQLAKVKPFKGKVSLQNSLHATKLIFNPDFDKAVELRKRLEENTESVSQPLSQIAEVPKLTMEEEFLTHTVMKTIEELKDSNEECCCIVMATIKHLIEGEDWWYKACRCGTSIFSDSKMYYCGTCNKHIVSVFYRYRLKVREIDSTDSATLVIFDRDAASLLDISCSDLLESTAQPNDKSFPAEISALVDQTFLFKVENKIVSNSRFETSYKVRRVCSDSELIQQFKDIHFSKKTDDSLDYVISDSQQLVGVVLSTDLPKQSMMMEIILFLMGSDDGQGLTMDSDSVTPCKRNSAECTDDPIDASSSVKLKKVIKQEKE 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi76g00049 521 Coils Coil 151 171 - -
Sebi76g00049 521 Gene3D - 265 431 IPR012340 -
Sebi76g00049 521 Pfam Replication factor-A C terminal domain 291 403 IPR013955 -
Sebi76g00049 521 SUPERFAMILY Nucleic acid-binding proteins 274 403 IPR012340 -
Sebi76g00049 521 CDD RPA1_DBD_A_like 20 107 - -
Sebi76g00049 521 PANTHER OS03G0429900 PROTEIN 8 401 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi76g00049 521 Pfam Domain of unknown function DUF223 43 110 IPR003871 -
Sebi76g00049 521 Gene3D - 6 108 IPR012340 -
Sebi76g00049 521 SUPERFAMILY Nucleic acid-binding proteins 8 112 IPR012340 -
Sebi76g00049 521 Gene3D - 114 251 IPR012340 -
Sebi76g00049 521 SUPERFAMILY Nucleic acid-binding proteins 119 247 IPR012340 -
Sebi76g00049 521 CDD RPA1_DBD_C 277 418 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi76g00049 Sebi-Chr76 652942 655455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi76g00049 18 371 Core DNA Replication Machinery Family AT4G19130 23.873 5.13e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi76g00049 - - vun:114180582 399.053