Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi76g00042 ATGGAGAACCTGGCGCAAGTGACAGGGTTGAGCGCTGCGAGCGTGGCGAACTTGGTGATATCAGCGGCGCACAACGCGAGGGCACACCGCCGGAACTGCCACCGTCTTGGGGAGCACGTGAGGGTGATAGGGAACCTCTTGGAGAAGCTCAAATCCACGGAGTTAACCAACTTACCGGCCACGAAGGAACCCTTGGACGGTCTCGAAAAGGCTCTGAAGAAAGCCTTGCATTTGGTGGAGAGTTGCAAAGACAAGAGTTACTTGTACATGCTTGCAATGGGTTGGAGCGTGGTGTATCAGTTCCGTCAAGTCCAGGCTGAAATCGATCGCTATCTTGGACTTGTGCCATTGATTTCCCTTGTCCATGACTTCCGTATCCAGCATTTCAATGAAGATTTGGAGGCCATTGGAGAGGATCAAACAGAATACACTCTGGATGAAGAAGAAATGGAGGCCCAAAACGTGATATTAAAGACTAGTCATTCTAAGAAGGATGCAGATATACTGGAAAAGTCCTTGTCTCGTAGGTATCCAGATTTGGGGTTCCACGAAGCTCTCCATGAAGAGAAAGAGAAACTACATGTTGAATTACAAAGATCAAGAACCAATAATGACCCTGAACAATGCAGGGTAATTGAACATCTTATTGAAGTCACAGAAAAAGTTGTCAATGTGCTACCTAACAAGGAGGTTACCAAACTTGTTGTCAATGAACCATCTTATTTGATTTCAGGGCATATGACTAATAATACCAAAGCCTCTGTGGATCATGAGCTGAAGTCTGGAGCTCAGAGAAAATCTGAATGGAAGACCGATCTCTTTGATTGCTGTAGTGAGCCTTGCTTATGTTTGAAGACCTGCTTCTACCCTTGTGGAACATTTTCTTGGATAGCTAATGTGGTTTCCAGAGGGGAAACTTCTCAAGAGCGTGCGATGACTGATCTAATGGCATACTCCATCTTTTGTGGTTGTTGCTGTTATTCTTACTGCATAAGAAGGAAATTGCGTAGTCAATTTAACATTGAGGGAGGTATGTGTGATGACTTTTTAACGCATCTAATTTGTTGCTGTTGTGCAATGGTTCAAGAATGCCGTGAGCTTGAGTGTTACTATCTGTTTAGAATTCAGATCCCTATTTTAGATCACGGTTCTGCTATTCGTTTAATGTTGTCTGGGATGCTAATGCTCCCTTGGATATGTATTCATACCTTGAAGAGTGTACATGAGGCTCGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTGCTCCCAAGCCCTCGTCTGGACCACACAAATCTAGGGAATGCCTCCCACTCATACTCATCTTGCGAAACAGGCTGAAGTATGCTCTGACTTACCGTGAAGTCATTGCTATTCTGATGCAGCGCCATGTCCTTGTTGATGGCAAAGTCAGGACAGACAAAACATATCCAGCTGGTTTTATGGATGTTGTATCCATTCCTAAAACAAATGAGAACTTTCGCCTGCTGTATGACACTAAAGGCCGATTCCGTCTCCACTCAGTTAGGGATGACGAGGGGAAGTTCAAGCTCTGCAAGGTTCGTTCAATTCAATTTGGGCAGAAGGGTATCCCATACTTGAACACCTATGATGGTCGCACAATCCGCTACCCAGACCCTTCCATCAGGGCTAATGACACCATTAAGCTTGATCTAGATGAAAACAAGATTGTTGATTTCATCAAATTTGATGTTGGGAATGTAGTTATGGTAACAGGTGGAAGGAACAGGGGGCGTGTTGGAGTGATCAAGAACAGGGAGAAGCATAAGGGAAGCTTTGAGACAATCCACGTTCAGGATGCCACTGGACATGAATTTGCAACTCGTATGGGCAATGTGTTCACTATTGGCAAGGGGACAAAACCATGGATATCTCTTCCCAAGGGTAAGGGTATTAAGTTATCAATCATTGAGGAAGCTAGGAAAAGGATTGCTGCTCAACAAGCAACTGCTGCTTAA 2019 0.4468 MENLAQVTGLSAASVANLVISAAHNARAHRRNCHRLGEHVRVIGNLLEKLKSTELTNLPATKEPLDGLEKALKKALHLVESCKDKSYLYMLAMGWSVVYQFRQVQAEIDRYLGLVPLISLVHDFRIQHFNEDLEAIGEDQTEYTLDEEEMEAQNVILKTSHSKKDADILEKSLSRRYPDLGFHEALHEEKEKLHVELQRSRTNNDPEQCRVIEHLIEVTEKVVNVLPNKEVTKLVVNEPSYLISGHMTNNTKASVDHELKSGAQRKSEWKTDLFDCCSEPCLCLKTCFYPCGTFSWIANVVSRGETSQERAMTDLMAYSIFCGCCCYSYCIRRKLRSQFNIEGGMCDDFLTHLICCCCAMVQECRELECYYLFRIQIPILDHGSAIRLMLSGMLMLPWICIHTLKSVHEARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEGKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPSIRANDTIKLDLDENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLSIIEEARKRIAAQQATAA 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi76g00042 672 Gene3D - 1 118 IPR036537 GO:0007166
Sebi76g00042 672 ProSiteProfiles S4 RNA-binding domain profile. 450 512 - -
Sebi76g00042 672 Pfam KOW motif 585 618 IPR005824 -
Sebi76g00042 672 FunFam 40S ribosomal protein S4 409 525 - -
Sebi76g00042 672 Coils Coil 657 672 - -
Sebi76g00042 672 SMART s4_6 450 514 IPR002942 GO:0003723
Sebi76g00042 672 Coils Coil 183 203 - -
Sebi76g00042 672 NCBIfam uncharacterized Cys-rich domain 267 368 IPR006461 -
Sebi76g00042 672 Pfam MCAfunc domain 17 159 IPR045766 -
Sebi76g00042 672 CDD MLKL_NTD 12 141 - -
Sebi76g00042 672 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 410 662 IPR000876 GO:0003735|GO:0005840|GO:0006412
Sebi76g00042 672 ProSitePatterns Ribosomal protein S4e signature. 416 430 IPR018199 -
Sebi76g00042 672 Pfam PLAC8 family 269 366 IPR006461 -
Sebi76g00042 672 Pfam RS4NT (NUC023) domain 411 447 IPR013843 -
Sebi76g00042 672 Gene3D - 530 580 IPR038237 -
Sebi76g00042 672 Coils Coil 65 85 - -
Sebi76g00042 672 Gene3D - 409 525 IPR036986 GO:0003723
Sebi76g00042 672 SMART kow_9 582 609 IPR005824 -
Sebi76g00042 672 Pfam 40S ribosomal protein S4 C-terminus 620 666 IPR032277 -
Sebi76g00042 672 CDD KOW_RPS4 583 637 IPR041982 -
Sebi76g00042 672 CDD S4 459 520 - -
Sebi76g00042 672 FunFam 40S ribosomal protein S4 530 580 - -
Sebi76g00042 672 Hamap 30S ribosomal protein S4e [rps4e]. 415 646 IPR000876 GO:0003735|GO:0005840|GO:0006412
Sebi76g00042 672 Gene3D - 583 653 IPR014722 -
Sebi76g00042 672 Pfam Ribosomal family S4e 503 577 IPR013845 -
Sebi76g00042 672 FunFam 40S ribosomal protein S4 583 653 - -
Sebi76g00042 672 Pfam S4 domain 455 498 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi76g00042 Sebi-Chr76 585165 592300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi76g00042 410 670 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 90.805 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi76g00042 - - gmx:100790874 576.244