Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi76g00036 ATGGGAGACCTAATACACGAGGCTCCCATAATTGTGAGGTGTCAAGGGTTAGATGCTAAACAACATAGTACAGTGTGGTACCCAGAGGAGAAGCAGTGTGCTGGAGAAGAGGCAGAGGCCAAAGCAGATGAAGATGGTGATATCAATTTTTTCTCAACTAGTGCTTCTCCTGATGAACCTATATCTGAAGAGAATGATAACGTTTGGGCATTAATTCCCGAACTCAGAAAAAAGTTGCATGTCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAATATTGCAGGGTCTACAAATCCAAGACTTATGGATGCAGAATCTGAAAACAGAGGTGGCTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACTTTTCTCATTATTGCTTTTCTCGTTAGCTACTTGAAGTTATTCCCAGGGAAGAGACCACTAGTCCTTGCTCCAAAAACAACACTGTATACTTGGTATAAAGAATTTATCAAGTGGGAGATTCCTATACCAGTGTATCTGATTCATGGTCGTAGAACCTACAGGGTATTCAAGCAGAAATCAATCGTTTTTCCTGGAATTCCCAAGCCCACTGATGATGTCAAGCATGTTTTGGATTGCCTGGAGAAGATACAAAAATGGCATTCACAACCGAGTGTTCTAATCATGGGCTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTATGCACACAGGAAGTTTATGGCTAAAGTATTGAGGGAAAGTCCTGGGATCCTGGTGCTGGATGAAGGGCACAATCCTAGAAGCACTAAATCAAGGTTGAGAAAAGTTTTGATGAAAGTACAGACAGAATTGAGAATATTACTTTCAGGTACTTTGTTTCAGAACAATTTCTGTGAATACTTCAACACTCTCTGCTTGGCAAGACCAAAATTTGCTTATGAAGTACTGGAAGCATTAGACCCAAAATACAGGAGAAAAAGGAAAGGAACAGAAAAATCACGTACTTCAATAGAGTCACGGGCTAGGAAATTCTTCTTAGATACAATTGCTAAGAAAATTGACTCAAATATTGGTGATGAGAGGATGCAAGGTCTAAACATGTTGAGAAATGTGACAAATGGTTTTATAGATGTTTATGAAGGTGGGAGTTCTGATGGTCTACCTGGTTTACAAATTTATACACTGCTAATGAATACAACTGATATACAGCAGGAGATTTTACAGAAACTGCACAAGAAAATGGCTAAGTGTAATGGATACCCTCTTGAGTTAGAGCTTTTGATAACCCTTGGTTCAATACATCCTTGGTTGGTCAAAACAGCTGTATGTGCTGAGAAGTTTTTCACTAAGGAACAACTGGTGGAGCTAGATAATTGGAAGTATGATTTGAAAATAGGGTCAAAAGTAAAATTTGTTTTGAGTCTTATCTTTCGCGTTTTCCAGAATGAGAAGGTTCTTATCTTCTGCCACAACATTGCACCTGTCAAATTATTTCTAGAATATTTTGAGAGGTGCTTCCGCTGGCAAAGAGGCCGGGAGGTTTTGGTACTAACTGGGGAATTAGAGCTCTTTGAACGTGGGAGAGTAATGGATAAGTTTGAGGAACCTGGTGGAGTATCTAAGATACTCCTTGCTTCAATCACAGCTTGTGCTGAAGGCATTAGTTTGACAGCAGCCTCTCGTGTCATTATGTTGGATTCAGAGTGGAACCCTTCAAAAACAAAGCAGGCTATTGCACGGGCCTTTCGTCCTGGTCAGCAAAAAGTTGTTTATGTGTATCAGCTTTTGGTGACAGGTTCATTGGAGGAAGATAAATACAGAAGAACCACTTGGAAAGAGTGGGTATCAAGCATGATTTTTAGTGAGGCCTTTGTGGAGGACCCTTCTAAATGGCAAGCTGAGAAGATTGAAGATGATATACTCAGAGAAATGGTTGCCGAGGACAAGTCAAAAGTATTCCATATGATAATGAAGAATGAGAAAACTTCAACAAACAAATGA 1980 0.3965 MGDLIHEAPIIVRCQGLDAKQHSTVWYPEEKQCAGEEAEAKADEDGDINFFSTSASPDEPISEENDNVWALIPELRKKLHVHQKKAFEFLWQNIAGSTNPRLMDAESENRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFKQKSIVFPGIPKPTDDVKHVLDCLEKIQKWHSQPSVLIMGYTSFLTLMREDSKYAHRKFMAKVLRESPGILVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFAYEVLEALDPKYRRKRKGTEKSRTSIESRARKFFLDTIAKKIDSNIGDERMQGLNMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNTTDIQQEILQKLHKKMAKCNGYPLELELLITLGSIHPWLVKTAVCAEKFFTKEQLVELDNWKYDLKIGSKVKFVLSLIFRVFQNEKVLIFCHNIAPVKLFLEYFERCFRWQRGREVLVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSKWQAEKIEDDILREMVAEDKSKVFHMIMKNEKTSTNK 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi76g00036 659 CDD SF2_C_SNF 453 589 - -
Sebi76g00036 659 SMART helicmild6 493 578 IPR001650 -
Sebi76g00036 659 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 104 303 IPR014001 -
Sebi76g00036 659 MobiDBLite consensus disorder prediction 35 62 - -
Sebi76g00036 659 SMART ultradead3 75 318 IPR014001 -
Sebi76g00036 659 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 464 625 IPR001650 -
Sebi76g00036 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 642 IPR027417 -
Sebi76g00036 659 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 23 657 IPR044567 GO:0080188
Sebi76g00036 659 Pfam SNF2-related domain 76 350 IPR000330 GO:0005524|GO:0140658
Sebi76g00036 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 314 IPR027417 -
Sebi76g00036 659 CDD DEXHc_ATRX-like 79 304 - -
Sebi76g00036 659 Gene3D - 381 659 IPR027417 -
Sebi76g00036 659 Gene3D - 53 346 IPR038718 -
Sebi76g00036 659 Pfam Helicase conserved C-terminal domain 462 577 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi76g00036 Sebi-Chr76 431967 434273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi76g00036 451 596 RAD5 or RAD16-like Gene Family AT5G43530 35.616 1.63e-13 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi76g00036 SNF2_N 1.3e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi76g00036 K10875 - gmx:100811703 1093.57