Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi75g00050 ATGGACTTGAAGTCGAATCACACCCCTGTTCTCACTGATACTGCACCCATAACAAAGTCAAGACTGCATGTGCATTCCAGTTTGTTGCCTTATTCCCATGCCGGGGCAACCTTTCCACATGGTATGTTATTGACTATCCCAAGGAAGAAGACGGGAATTCTTGAAGATGTCCGTTCTAGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCACCCAGAAATATAACAAAGGATGTTAGTAATGGATTTGCATCATCTGAAGCTGATACTGCTAGTTCTTATTTCACCTGGCTGCTAAAATATCCATCAGCACTTACATCTTTTGATCAAATTACGAACTATGCAAAAGGCAAAAGAATTGCATTGTTTATGGATTATGATGGAACTCTTTCACCGATTGTGGATAATCCTGACTGTGCCTTCATGTCTGAAAATATGCGTGCTGCTGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATTAGTGGAAGAAGTCGTGACAAGGTGTATGAATTTGTAGGACTAACAGAACTCTATTATGCTGGTAGTCATGGGATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAACCACCCTAATTGCATCATTAGGTCTGCAGATAAGCAGGGTAAGGAAGTTAATTTATTCCAACCTGCTGCTGAATTCCTGCCCATGATTGATGAGGTACTTAAGTCTCTCATTGAGTGTACCAAAGACATCAAAGGAGCAAAAGTTGAGAACAACAAATTTTGTGTCTCTGTACATTACCGCAATGTAGATGAGAAGAACTGGGATTTGGTGGGGCAGCGTGTTAATGATGTTCTAAAGTGCTATCCACGTTTGAGACTAACTCATGGGCGTAAGGTTTTAGAGGTTCGACCTGTGATTAACTGGGATAAGGGAAAAGCTGTGACATTTTTACTTGAGTCACTTGGACTTAACAATTGTGATGATGTGCTTCCTATATACATTGGAGATGATCGGACAGATGAAGATGCATTTAAGGTTTTGAGAGAGGGAAATAAAGGTTATGGGATCTTAGTGTCTTCAGCACCAAAGGAAAGCAATGCAATTTACTCTCTTCGTGATCCATCAGAGGTCATGGAATTTCTCAAGTCGCTTGTGGTATGGAAGTCAAGCTCCTTAAAAAGCCTTATATAG 1173 0.4058 MDLKSNHTPVLTDTAPITKSRLHVHSSLLPYSHAGATFPHGMLLTIPRKKTGILEDVRSSGWLDAMKSSSPPPRNITKDVSNGFASSEADTASSYFTWLLKYPSALTSFDQITNYAKGKRIALFMDYDGTLSPIVDNPDCAFMSENMRAAVKKVAEYFPTAIISGRSRDKVYEFVGLTELYYAGSHGMDIIGPVRQSVSDNHPNCIIRSADKQGKEVNLFQPAAEFLPMIDEVLKSLIECTKDIKGAKVENNKFCVSVHYRNVDEKNWDLVGQRVNDVLKCYPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSAPKESNAIYSLRDPSEVMEFLKSLVVWKSSSLKSLI 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi75g00050 390 Gene3D - 121 213 IPR023214 -
Sebi75g00050 390 Gene3D - 222 388 IPR023214 -
Sebi75g00050 390 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 29 386 IPR044651 GO:0004805|GO:0005992
Sebi75g00050 390 FunFam Trehalose 6-phosphate phosphatase 229 388 - -
Sebi75g00050 390 Pfam Trehalose-phosphatase 124 369 IPR003337 GO:0003824|GO:0005992
Sebi75g00050 390 CDD HAD_TPP 122 373 - -
Sebi75g00050 390 NCBIfam HAD-IIB family hydrolase 123 342 IPR006379 -
Sebi75g00050 390 NCBIfam trehalose-phosphatase 118 379 IPR003337 GO:0003824|GO:0005992
Sebi75g00050 390 SUPERFAMILY HAD-like 122 380 IPR036412 -
Sebi75g00050 390 FunFam Trehalose 6-phosphate phosphatase 121 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi75g00050 Sebi-Chr75 1402943 1405331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi75g00050 115 378 Trehalose Biosynthesis Gene Families AT1G70290 26.241 1.03e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi75g00050 K01087 - gmx:100819495 697.197