Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi75g00025 ATGCAGGGTTTTGGAAAGCAACAGGGAGAGACAAGTGCATTAATTAGGAATAGCTACAAGAAGATTGGAATGAGAAAAGCCCTTGTCTTCTACAAAGGCAGAGCTCCTCGTGGACAAAAGATTGATTGGATCATGCATGAGTACCGCCTTGAAGATGGCAATGATCCTCGAGAAAATGCTAATGAAGATGGTTGGGTGGTATGCAGGGTGTTCAAGAAGAAGAACCTATTTAAGATTGTAAATGAAGGTGGCTCCACACACAATCCAGACCAACAAATCAACAACTCCTCAAGCACCAATTCCCGCTCCTTCATGCACAGAAAAAACCAATACTTGCTGCATCAACAACAAAACCCTAGGAACCCGTCAGGGTTTGAGTTTTATAAGCCTGAGCTTGCTCTCCACTACCCACATTTACAAAACCCTCAATAG 432 0.4329 MQGFGKQQGETSALIRNSYKKIGMRKALVFYKGRAPRGQKIDWIMHEYRLEDGNDPRENANEDGWVVCRVFKKKNLFKIVNEGGSTHNPDQQINNSSSTNSRSFMHRKNQYLLHQQQNPRNPSGFEFYKPELALHYPHLQNPQ 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi75g00025 143 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 110 - -
Sebi75g00025 143 Pfam No apical meristem (NAM) protein 3 50 IPR003441 GO:0003677|GO:0006355
Sebi75g00025 143 Gene3D NAC domain 1 77 IPR036093 GO:0003677|GO:0006355
Sebi75g00025 143 MobiDBLite consensus disorder prediction 82 107 - -
Sebi75g00025 143 ProSiteProfiles NAC domain profile. 1 73 IPR003441 GO:0003677|GO:0006355
Sebi75g00025 143 SUPERFAMILY NAC domain 14 73 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi75g00025 Sebi-Chr75 540542 541121 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi75g00025 3 137 NAC Transcription Factor Family AT4G10350 60.993 1.83e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi75g00025 NAM 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi75g00025 - - gmx:100804181 238.039