Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi75g00023 ATGGGTTCTTCTAATGGTGGTGTGCCTCCGGGATTTAGATTTCATCCAACGGATGAAGAATTGCTTCATTACTACTTGAAGAAGAAGGTGTCCTTTCAGAAGTTTGATATGGATGTTATTAGAGAAGTTGACTTGAACAAGATGGAGCCTTGGGACTTGCAAGAGAGATGTAGAATTGGATCAACTCCACAAAACGAGTGGTATTTCTTCAGTCACAAGGATAGGAAGTACCCAACAGGATCAAGGACTAACAGAGCAACAAATGCAGGGTTTTGGAAAGCAACAGGGAGAGACAAGTGCATTAGGAACAGCTACAAGAAGATTGGAATGAGAAAAACCCTTGTCTTCTACAAAGGCAGAGCTCCTCATGGACAAAAGACTGATTGGATCATGCATGAGTATCGCCTCGAAGATGGCAATGATCCTCAAGAAGACGGTTGGGTGGTATGCAGGGTGTTCAAGAAGAAGAACCTATTTAAGATTGGAAATGAAGGTGGCTCCACACACAATCCAGAGCAACAAATCAACAACTCCTCAGGCACTAATGCCCGCTCCTTCATGCACAGAGAAAACCAATACTTGCTACATCAACAACAAAACCCTAGGAACCCGTCAGGGTTTGAGCTTGATAAGCCTGAGCTTGCTCTCCACTACCCACATTTGCAAAACCCTCAATACTCGCTCTTCCAATCTCAACCCCTTCTTCAAACCCACAAACCGTTGGTTTATGACTACTCATATGCGTCATCTCTACCCTCTGAGCCCCCTGTCATAGCAAAACAGCTCATGACAAACCCTAGAGACTGTGAGAGTGGTAGTGATGGTCTGAGATACCAAGTTTCAGAATCTGGCATGGAAGTTGGTTCATGTGAACCACCTCAAGAAATAGGTGGTGGAAGAGGTGAAGGAATGAACGAATGGGGCGTGCTTGATAGGCTAGTGACCTCTCATCTTGGAAATGAAGACTCAACCAAAGGGGTTAGATTTGATGATGGAAATACACAGTCTGTTCATCAAATTAACCAACTTTCATTGCGGGGAGAGATGGACTTTTGGGCTTATGGAAAACAATGA 1074 0.4413 MGSSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDGNDPQEDGWVVCRVFKKKNLFKIGNEGGSTHNPEQQINNSSGTNARSFMHRENQYLLHQQQNPRNPSGFELDKPELALHYPHLQNPQYSLFQSQPLLQTHKPLVYDYSYASSLPSEPPVIAKQLMTNPRDCESGSDGLRYQVSESGMEVGSCEPPQEIGGGRGEGMNEWGVLDRLVTSHLGNEDSTKGVRFDDGNTQSVHQINQLSLRGEMDFWAYGKQ 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi75g00023 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 210 - -
Sebi75g00023 357 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Sebi75g00023 357 SUPERFAMILY NAC domain 7 155 IPR036093 GO:0003677|GO:0006355
Sebi75g00023 357 FunFam NAC domain-containing protein 17 159 - -
Sebi75g00023 357 Gene3D NAC domain 17 160 IPR036093 GO:0003677|GO:0006355
Sebi75g00023 357 ProSiteProfiles NAC domain profile. 8 155 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi75g00023 Sebi-Chr75 510546 513469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi75g00023 1 351 NAC Transcription Factor Family AT1G33280 58.543 1.13e-130 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi75g00023 NAM 2.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi75g00023 - - gmx:100804181 660.988