Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi756g00006 ATGACGGAGGTGGCGAGATCAGTGGTACATGAGGTTTTCGGAGAAAGGATCATCGTCGTGGATGAGCCAATCGTCGATTACATCGTCAACGTCCTCGCCGACGATGACTTCGATTTTGGACTCGACGGTGAAGGAGCTTTCGAAGCCCTCGGAGAGCTCTTCGTCGCCGCCGGTTGCGTCTACGACTTCCCCGAATGTCGCTCCGTATGCAGCAAACTATCTGACAAGTTTGGGAAGCACGGTTTGGTGAAGGTGAAGCCAACGGTGCGAAGCCTCGCGGCGCCGTTTCGAATGAACGAAGGAATGGACGACGGTGTTGCTCCCAAGAAGAAGCCTGAGCCTGTCGACGGTCCTCTCTTAACGGAACGCGACCGTATAAAGCTCGAAAGGAGAAAGAGGAAGGATGAACGCCAAAGAGAGGCACAGTACCAAATGCATTTGAAGGAGATGGAAGCGGCGAGAGCGGGAATGCCTGTGGTGTGTGTTAGGCACGAGGAGGGTGGTGGACCCACTGTGAAGGACATTCATATGGAGAACTTCAATATCTCTGTTGGTGGCCGTGATCTTATTGTGGATGGTGTTGTCACACTCTCTTTTGGAAGGCATTATGGTGGACTTTTCCTCTTTTCATTCTTTCTCTCTTTACTGTGGTGTGGACTGAAAGAAGAAACAGAGATGAATAAAAGAAATTGTTTGTTGACATGTGCAGGGCTTGTTGGAAGAAATGGGACGGGGAAAACAACTTTCCTCAGGCACATGGCTATGCATGCCATTGACGGCATTCCCAGGAATTGCCAGATATTGCACGTGGAGCAAGAGGTCGTTGGTGATGATACAACTGCGTTGCAGTGTGTTCTCAATTCTGACATTGAGAGAACTCAGCTTCTGGAGGAAGAAGCTGAATTACTTGCCAAACAGAGAGAACCTGATGAAAACATTGAAAAGGGCAATAATAATGTGAATGAAGTGGTTGAAAGAGATGCTATTTCGCAAAGGCTGGAGGAATTATACAAGAGGCTTGAGTTCATTGATGCTTATTCTGCGGAAGCACGAGCAGCATCAATACTTGCAGGTCTGAGTTTCTCTCCTGAGATGCAGAAGAAGGCAACAAAAACATTTTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCACTGTTTATAGAGCCTGATATACTGCTTCTTGATGAGCCTACGAATCATCTTGATCTTCATGCTGTCTTATGGCTTGAATCATACCTGGTTAGATGGCCAAAAACATTTATTGTTGTTTCTCATGCTAGAGAATTTTTAAATACGGTGGTTACTGATATAATTCACTTACAAAACCAAAAACTGACCACTTACAAAGGAAATTATGATACTTTTGAGAAGACCCGAGAAGAACAAATTAAAAACCAACAGAAAGCATTAGAGGCAAATGAACGTGCAAGATCTCATATGCAGGCCTTCATTGACAAGTTCCGATATAATGCCAAGAGGGCATCACTTGTTCAATCTAGAATCAAGGCTTTGGATCGAATGGGCCATGTAGATGAAATTGTTAATGATCCAGACTACAAGTTTGAGTTCCCCACTCCAGATGATAGACCAGGTCCACCGATAATAAGTTTCAGTGATGCATCATTTGGTTATCCTGGGGGGCCTATTCTATTTAAGAATTTGAACTTTGGAATTGATCTTGACAGCCGTATTGCAATGGTAGGACCAAATGGCATTGGCAAGTCTACTATACTTAAGTTAATTGCTGGGGAACTACAACCAAGTTCCGGGACTGTCTTCCGATCTGCTAAGGTTCGTATAGCAGTGTTCAGTCAGCACCATGTTGATGGACTTGACTTATCCTCAAATCCTCTTCTGTATATGATGCGCTGCTATCCTGTGAGTTCCTCGTATTCAGAGACAATTACCTGTTTTTCTGAGTGTTTATGA 1935 0.4491 MTEVARSVVHEVFGERIIVVDEPIVDYIVNVLADDDFDFGLDGEGAFEALGELFVAAGCVYDFPECRSVCSKLSDKFGKHGLVKVKPTVRSLAAPFRMNEGMDDGVAPKKKPEPVDGPLLTERDRIKLERRKRKDERQREAQYQMHLKEMEAARAGMPVVCVRHEEGGGPTVKDIHMENFNISVGGRDLIVDGVVTLSFGRHYGGLFLFSFFLSLLWCGLKEETEMNKRNCLLTCAGLVGRNGTGKTTFLRHMAMHAIDGIPRNCQILHVEQEVVGDDTTALQCVLNSDIERTQLLEEEAELLAKQREPDENIEKGNNNVNEVVERDAISQRLEELYKRLEFIDAYSAEARAASILAGLSFSPEMQKKATKTFSGGWRMRIALARALFIEPDILLLDEPTNHLDLHAVLWLESYLVRWPKTFIVVSHAREFLNTVVTDIIHLQNQKLTTYKGNYDTFEKTREEQIKNQQKALEANERARSHMQAFIDKFRYNAKRASLVQSRIKALDRMGHVDEIVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPVSSSYSETITCFSECL 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi756g00006 644 Gene3D - 234 495 IPR027417 -
Sebi756g00006 644 MobiDBLite consensus disorder prediction 101 120 - -
Sebi756g00006 644 ProSitePatterns ABC transporters family signature. 373 387 IPR017871 GO:0005524|GO:0016887
Sebi756g00006 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 608 IPR027417 -
Sebi756g00006 644 Pfam ABC transporter 235 401 IPR003439 GO:0005524
Sebi756g00006 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 455 IPR027417 -
Sebi756g00006 644 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 236 629 - -
Sebi756g00006 644 MobiDBLite consensus disorder prediction 103 120 - -
Sebi756g00006 644 CDD ABCF_EF-3 175 446 - -
Sebi756g00006 644 SMART AAA_5 232 446 IPR003593 GO:0016887
Sebi756g00006 644 Gene3D - 499 637 IPR027417 -
Sebi756g00006 644 FunFam ATP-binding cassette sub-family F member 2 524 628 - -
Sebi756g00006 644 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 206 469 IPR003439 GO:0005524
Sebi756g00006 644 FunFam ABC transporter F family member 3 233 482 - -
Sebi756g00006 644 Pfam ABC transporter 440 520 IPR032781 -
Sebi756g00006 644 Pfam ABC transporter 554 597 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi756g00006 Sebi-Chr756 386187 391213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi756g00006 494 599 Calmodulin-binding Proteins AT2G36910 31.481 5.23e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi756g00006 K06158 - gmx:547980 1022.31