Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi751g00024 ATGTTCTACTCTGCTTATGGATATGGTGGAGGGTGGGTTGATGCACATGCTACCTTCTATGGAGGGGGTGGGGCTTGTGGATATGGTAACCTCTACAGCCAGGGGTATGGAACAAACACTGCTGCTCTGAGCACAGCTTTATTCAACAATGGTTTGAGCTGTGGCTCTTGCTTTGAGATAAGGTGTGTGAATGACCGTAGATGGTGCCTTCCTGGTTCCATTGTGGTCACTGCCACTAACTTCTGCCCACCAAACAATGCCTTGCCTAACAATGCAGGAGGATGGTGCAACCCTCCTCTGCACCACTTTGATCTTGCTCAGCCTGTTTTCCTGAGAATTGCACAATACAAAGCTGGAATTGTGCCTGTGGTGCCCTGCAGGAGAAGGGGAGGCATCAGGTTCACCATCAATGGTCATTCCTACTTCAACCTGGTCCTAATCACAAATGTTGGTGGTGCTGGGGATGTGCATTCTGTGAGCATTAAAGGGTCAAGAACTGGATGGATGCCAATGTCAAGGAACTGGGGCCAGAACTGGCAGAGCAACAACTATTTGAATGGCCAAAGCCTGTCTTTCAAGGTCACCACCAGTGATGGCCGTACTGTGGTCTCCTATAATGCTGCCCCAGCTGGATGGTCCTTTGGCCAAACCTACACTGGTGCTCAATTCCGCTAG 675 0.5007 MFYSAYGYGGGWVDAHATFYGGGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEIRCVNDRRWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFLRIAQYKAGIVPVVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSYNAAPAGWSFGQTYTGAQFR 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi751g00024 224 PRINTS Expansin signature 62 73 IPR002963 GO:0009664
Sebi751g00024 224 PRINTS Expansin signature 142 163 IPR002963 GO:0009664
Sebi751g00024 224 PRINTS Expansin signature 130 142 IPR002963 GO:0009664
Sebi751g00024 224 PRINTS Expansin signature 206 222 IPR002963 GO:0009664
Sebi751g00024 224 PRINTS Expansin signature 35 49 IPR002963 GO:0009664
Sebi751g00024 224 PRINTS Expansin signature 74 84 IPR002963 GO:0009664
Sebi751g00024 224 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Sebi751g00024 224 PANTHER EXPANSIN-A15 7 223 IPR002963 GO:0009664
Sebi751g00024 224 SMART dpbb_1 40 125 IPR007112 -
Sebi751g00024 224 Gene3D - 3 127 IPR036908 -
Sebi751g00024 224 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 23 131 IPR007112 -
Sebi751g00024 224 PRINTS Expansin/Lol pI family signature 22 40 IPR007118 GO:0005576
Sebi751g00024 224 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Sebi751g00024 224 PRINTS Expansin/Lol pI family signature 168 182 IPR007118 GO:0005576
Sebi751g00024 224 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Sebi751g00024 224 Gene3D - 131 223 IPR036749 -
Sebi751g00024 224 Pfam Lytic transglycolase 40 123 IPR009009 -
Sebi751g00024 224 SUPERFAMILY PHL pollen allergen 128 220 IPR036749 -
Sebi751g00024 224 Pfam Expansin C-terminal domain 132 209 IPR007117 -
Sebi751g00024 224 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 141 220 IPR007117 -
Sebi751g00024 224 SUPERFAMILY Barwin-like endoglucanases 6 149 IPR036908 -
Sebi751g00024 224 FunFam Expansin 131 223 - -
Sebi751g00024 224 CDD DPBB_EXPA_N 11 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi751g00024 Sebi-Chr751 357473 358618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi751g00024 1 224 Expansin Gene Family AT2G03090 81.277 5.18e-139 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi751g00024 - - gmx:100796316 440.654