LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi751g00007	ATGAGCAGCGGCAGTTCGTCCGGCGGCAGCGGAACGAAGAAGGAGAAGGAGAAGGCGAGGGTGAGCCGTACGTCACTAATACTATGGCACGCGCACCAGAACGACTCTGCAGGGGTGCGGAAGCTTCTGGAGGAGGATCCGTCGCTGGTAAATGCGACGGATTACGACAACCGCACACCGCTCCACGTGGCTTCGCTCCACGGCTGGCTCGATGTCGCCAAGTGCTTGATTGAATTCGGTGCTGACGTCAATGCCCAGGATCGTTGGAAAAACACTCCTCTGGCAGATGCAGAAGGAGCTAAACGAACTGCGATAATTGAGCTTTTGAAATCACATGGAGGCTTGTCTTATGGCCAAAATGGAAGCCATTTTGAACCAAAGCCTGTTCAACCCCCATTGCCTAACAAGTGTGATTGGGAAGTTGACCCTTCTGAGCTGGACTTCTCAAATTCAGTTTGCATTGGAAAGGGATCTTTTGGTGAGATTTTAAGAGCCCATTGGCGTGGAACTCCTGTTGCTGTCAAACGCATTCTTCCATCTCTATCAGATGATAGAATGGTGATTCAAGACTTCAGGCAAGAGGTTAATTTACTTGTGAAGCTTCGCCACCCTAATGTTGTTCAGTTTCTTGGAGCTGTTACTGACAGGAAGCCCCTTATGTTAATTACTGAGTATCTAAGAGGAGGTGATCTTCATAGATACCTCAAGGATAAAGGTTCACTTAATCCTTCTACAGCTATCAACTTTGCCTTGGGCATTGCCAGAGGGATGGCCTATCTTCACAATGAACCAAATGTTATAATTCATCGAGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATTTTAATGCTGACCATTTGAAAGTTGGAGATTTTGGATTAAGTAAGCTTATTAAAGTCCAAAGTTCTCATGATGTATACAAGATGACGGGTGAAACTGGAAGCTACCGCTATATGGCTCCTGAAGTTTTCAAACACCGGAGATATGATAAGAAGGTTGACGTGTTCTCCTTTGCAATGATTTTGTATGAGATGCTTGAAGGTGAACCACCTTTTGCAAATTATGAACCTTATGATGGAGCCAAATATGTGGCAGAAGGGCATAGGCCTACTTTTCGGGCAAAGGGTTATATCCCTGAACTACGAGAGTTAACAGACGTGTGTTGGGCTGGTGACATGAATCAAAGACCTTCTTTCATAGAGATCCTTAAACGACTTGAAAGGATCAAGGAAAACTTACCTTCAGATCATCACTGGAGCTTATTCGCTTCATAA	1275	0.4502	MSSGSSSGGSGTKKEKEKARVSRTSLILWHAHQNDSAGVRKLLEEDPSLVNATDYDNRTPLHVASLHGWLDVAKCLIEFGADVNAQDRWKNTPLADAEGAKRTAIIELLKSHGGLSYGQNGSHFEPKPVQPPLPNKCDWEVDPSELDFSNSVCIGKGSFGEILRAHWRGTPVAVKRILPSLSDDRMVIQDFRQEVNLLVKLRHPNVVQFLGAVTDRKPLMLITEYLRGGDLHRYLKDKGSLNPSTAINFALGIARGMAYLHNEPNVIIHRDLKPRNVLLVNFNADHLKVGDFGLSKLIKVQSSHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVFSFAMILYEMLEGEPPFANYEPYDGAKYVAEGHRPTFRAKGYIPELRELTDVCWAGDMNQRPSFIEILKRLERIKENLPSDHHWSLFAS	424

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi751g00007	424	ProSiteProfiles	Protein kinase domain profile.	148	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi751g00007	424	FunFam	Integrin-linked protein kinase family	227	422	-	-
	Sebi751g00007	424	PIRSF	ILK	1	424	-	-
	Sebi751g00007	424	SUPERFAMILY	Protein kinase-like (PK-like)	147	419	IPR011009	-
	Sebi751g00007	424	ProSiteProfiles	Ankyrin repeat profile.	56	88	IPR002110	GO:0005515
	Sebi751g00007	424	Pfam	Ankyrin repeats (many copies)	42	94	IPR002110	GO:0005515
	Sebi751g00007	424	FunFam	serine/threonine-protein kinase STY46-like	141	227	-	-
	Sebi751g00007	424	Gene3D	Transferase(Phosphotransferase) domain 1	228	419	-	-
	Sebi751g00007	424	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	267	279	IPR008271	GO:0004672\|GO:0006468
	Sebi751g00007	424	CDD	STKc_MAP3K-like	154	406	-	-
	Sebi751g00007	424	Gene3D	Phosphorylase Kinase; domain 1	140	227	-	-
	Sebi751g00007	424	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	80	411	-	-
	Sebi751g00007	424	SUPERFAMILY	Ankyrin repeat	27	114	IPR036770	-
	Sebi751g00007	424	Gene3D	-	3	123	IPR036770	-
	Sebi751g00007	424	Pfam	Protein tyrosine and serine/threonine kinase	153	406	IPR001245	GO:0004672\|GO:0006468
	Sebi751g00007	424	ProSiteProfiles	Ankyrin repeat region circular profile.	56	88	-	-
	Sebi751g00007	424	ProSitePatterns	Protein kinases ATP-binding region signature.	154	175	IPR017441	GO:0005524
	Sebi751g00007	424	SMART	serkin_6	148	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi751g00007	424	SMART	ANK_2a	56	85	IPR002110	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi751g00007	Sebi-Chr751	113971	120392	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi751g00007	2	424	MAP Kinase Kinase Kinase	AT1G14000	82.506	0.0	727

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-5	Sebi751g00007		PK_Tyr_Ser-Thr	1.2e-61	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi751g00007	-		-	gmx:100789273	783.097