Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi750g00019 ATGAAGAAACCACCACCTTCCTCCTCCGTCAATGTCCCTCTCGCCGCCGTCACCCTCGCCGTCATAGTTATACTCTCTTTTCTTCCCTCCTCGCATGGTCTAGGCTCCGGCACCACCCTGGCCGTCACCGACGCCTCCGCCACCGTATGCGGCATCGTAGCAGGGGAATCCACACAGCGCATTGAGTGTTACCGTCCCGAGCAGATCGTTCCCGTCGTCCCCAACGTTTCCTTTTCCTCCATTTCCGGCGGGAGGGACTACTTCTGCGGCCTCAGGTCCGGTAACTACAGTTTACATTGCTGGAACACTAACACTACCTCTTCTTTCCAAGGAAAAAGGCTTTACAACAATGACTCTGTTCTATTGGAGAATCTTGCAGTTGGGGATGACCAAGTTTGCGCCACAGTGGTGGGTACTGGAACGGTTGAATGTTGGAGAACCACTAGGGCTTTTAATTTGTCATCTGGGTCTGATCAATTTGCTTCGATTTCATCTGGAGGAAGTAACAGTTCTGGGCAATTGAATGTTCCCCAAGGTGGGGCTTTTGAGTATGATGGGTTAGCATTAGGAGCTGAGCATGGTTGTGCTATTAGAAGATTGAATGGTTCTGTTGTTTGTTGGGGTGGTAGAGGGCAATTCTCTGTGAATGTTACAGAAGGAGTTTCTTTTGAGTTGATTGTTTCAGGGTCCAATTTTACTTGTGGATTGACAACAAGCAATTTTTCAGTTATGTGTTGGGGCCCTGCTTGGTCTAATGGTAATGGTTCTAGTTCAAGGTTTGAGCTTCCTTTGCCTCGTATTCTTCCAGGGCCTTGTGTTCAATCTTCTTGTAGTGAGTGTGTTTATTGCTTATGGAGTGGAGTTTGTTTTGGTAAGAAGAAAGTGCACAATTCTGTGCAACCAACAATCACTAGAGGTAGCAGCAATTCTAGTGGTGGTGGTGCTTCCAATCATAGCCCATCTTCAATAGCATCCACTATTAGGCGTCAAAGTTCAAGAATAATGAGGCGCCAGAGGAGTGGAACCTCATCAACAAAGCACCCAGAAAGGGCTGAAGAGTTCACCCTTGCTGAGCTTATAACAGCCACCAACAATTTCTCACTTGAGAACAAGATTGGTGCTGGAAGTTTTGGTGTTGTGTACAAAGGTAAACTCACAGATGGTCGTGAGGTGGCAATCAAGAGAGGTGAAACAGGTTCAAAGATGAAGAAGTATCAAGAGAAAGAAAGTGCATTTGAGTCTGAAATTGCCTTCTTGTCACGTTTACACCATAAGCACTTGGTTAGGCTAGTTGGGTACTGTGAAGAGAAAGATGAGAGGCTATTGGTGTATGAGTACATGAAGAATGGAGCATTATATGATCATTTGCATGACAAGAACAATGTGGAAAAGGGTAGCAGTGTCTTGAATTCATGGAAAATGAGGATCAAAATTGCCTTGGATGCTTCAAGAGGAATAGAATATCTACATAACTATGCAGTTCCATCTATAATTCATAGAGATATCAAGTCTTCAAACATCCTCATTGATGCAACTTGGACAGCAAGAGTATCTGATTTTGGATTGTCATTGATGAGTCCAGAATCTGACCGTGAATACAAACCAACAAAAGCAGCAGGAACACTTGGATACATTGATCCAGAGTACTATGGTCTAAATGTGTTAACAGCAAAGAGTGATGTCTATGGGCTTGGAGTTGTACTACTAGAACTTTTAACAGGAAAGAGAGCTGTATTCAAGCATGGTGAAGACCCTCTAAGTGTTGTGGACTTTGCAGTACCTGCAATTTTGGCTGGAGAATTGGTGAAAATTTTGGATCCCAGGGTTGGTCCACCAGAGTCAAATGAAGCAGAAGCAGTGGAGTTAGTGGCTTATATTGCTATGAATTGTGTGAATTTGGAAGGGAAAGATAGACCAACGATAGCTGATATTGTGGCCAATTTGGAGCGAGCTTTGGTTATTTGTGATGGTAGCCATGACAGCATTTCCAGCATTACAATCTCTGTTGTTTCAGATTGA 2019 0.4413 MKKPPPSSSVNVPLAAVTLAVIVILSFLPSSHGLGSGTTLAVTDASATVCGIVAGESTQRIECYRPEQIVPVVPNVSFSSISGGRDYFCGLRSGNYSLHCWNTNTTSSFQGKRLYNNDSVLLENLAVGDDQVCATVVGTGTVECWRTTRAFNLSSGSDQFASISSGGSNSSGQLNVPQGGAFEYDGLALGAEHGCAIRRLNGSVVCWGGRGQFSVNVTEGVSFELIVSGSNFTCGLTTSNFSVMCWGPAWSNGNGSSSRFELPLPRILPGPCVQSSCSECVYCLWSGVCFGKKKVHNSVQPTITRGSSNSSGGGASNHSPSSIASTIRRQSSRIMRRQRSGTSSTKHPERAEEFTLAELITATNNFSLENKIGAGSFGVVYKGKLTDGREVAIKRGETGSKMKKYQEKESAFESEIAFLSRLHHKHLVRLVGYCEEKDERLLVYEYMKNGALYDHLHDKNNVEKGSSVLNSWKMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSLMSPESDREYKPTKAAGTLGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAVFKHGEDPLSVVDFAVPAILAGELVKILDPRVGPPESNEAEAVELVAYIAMNCVNLEGKDRPTIADIVANLERALVICDGSHDSISSITISVVSD 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi750g00019 672 FunFam serine/threonine-protein kinase-like protein CCR1 335 446 - -
Sebi750g00019 672 SMART serkin_6 366 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi750g00019 672 SUPERFAMILY Protein kinase-like (PK-like) 344 648 IPR011009 -
Sebi750g00019 672 MobiDBLite consensus disorder prediction 301 341 - -
Sebi750g00019 672 Gene3D - 30 161 IPR009091 -
Sebi750g00019 672 Gene3D - 162 348 IPR009091 -
Sebi750g00019 672 MobiDBLite consensus disorder prediction 301 349 - -
Sebi750g00019 672 Gene3D Phosphorylase Kinase; domain 1 349 446 - -
Sebi750g00019 672 Pfam Protein kinase domain 367 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi750g00019 672 ProSitePatterns Protein kinases ATP-binding region signature. 372 394 IPR017441 GO:0005524
Sebi750g00019 672 SUPERFAMILY RCC1/BLIP-II 69 285 IPR009091 -
Sebi750g00019 672 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 123 658 IPR044815 GO:0004674
Sebi750g00019 672 Gene3D Transferase(Phosphotransferase) domain 1 447 660 - -
Sebi750g00019 672 FunFam Serine/threonine-protein kinase-like protein CCR4 447 665 - -
Sebi750g00019 672 ProSiteProfiles Protein kinase domain profile. 366 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi750g00019 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi750g00019 Sebi-Chr750 266602 269016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi750g00019 281 672 Receptor kinase-like Gene Family AT3G55950 71.921 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Sebi750g00019 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi750g00019 - - qsa:O6P43_013857 750.74