LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi74g00002	ATGTGTATAAATATTGTGGTGAGGGAATCACGATTTGCGTTCAAAGACATGATGAACGGTGAAATTTTCATACAAGCAGCCCCCACTGCCACCTTTCTTCCTAAATCAAGCCCCGCCATAACCCACTTCACATTTGAACCAATTTCCTCCACAAACCACCTCATCAACTCCTTCTCTCCTCCATGCAACCAAACAAGTAGTGATCTCGAAGGAATTGCTGCCATTGTTGGAGAGCATGTCCTCTTCGGAGGCAAACAACACAATGGCACTCAAAACAACAATGAAACAAGTTCCAAAACCCCAAAGAAAGAAGAGAAAACCGGTCACAATGATACCGATAACAATAACAGTAACATTTCTTCTGTGAGTAAGAGATACAGAGGAGTGAGGAAGAGACCCTGGGGGAGATGGTCAGCGGAGATACGCGACCGAATCGGGCGGTGCCGACACTGGCTAGGAACTTTTGACACGGCGGAGGAGGCGGCGCGTGCGTATGACGCGGCAGCGAGGCGCTTGAGGGGCTCCAAAGCTCGAACTAACTTTGAGATACCCTCTGTTTTGCCAACTTCCTCTTCTTCCGAAGTGAAAAGGGGGGTCAGTGGTGACGGTGGTTCTCGTAAGGCTAAAGGTGTACGTGGCAGTGGTAGGAAGTGCTCTGTTGTTACCTCTGTTGCTCAGTTGTTCAGTGGGGTGCCTGAAATTGTAAGAGGTAGTAATGGTGATGAGAAAGAAAGCAAAGGGTTTGGGAGTGTGGAGCTGGACTTGAAACTTGGTGTAACCTTTGTTGGTAGAAATTAA	798	0.4787	MCINIVVRESRFAFKDMMNGEIFIQAAPTATFLPKSSPAITHFTFEPISSTNHLINSFSPPCNQTSSDLEGIAAIVGEHVLFGGKQHNGTQNNNETSSKTPKKEEKTGHNDTDNNNSNISSVSKRYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPTSSSSEVKRGVSGDGGSRKAKGVRGSGRKCSVVTSVAQLFSGVPEIVRGSNGDEKESKGFGSVELDLKLGVTFVGRN	265

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi74g00002	265	MobiDBLite	consensus disorder prediction	188	213	-	-
	Sebi74g00002	265	CDD	AP2	124	183	IPR001471	GO:0003700\|GO:0006355
	Sebi74g00002	265	FunFam	Ethylene-responsive transcription factor 2	124	183	-	-
	Sebi74g00002	265	Gene3D	AP2/ERF domain	124	183	IPR036955	GO:0003700\|GO:0006355
	Sebi74g00002	265	PRINTS	Ethylene responsive element binding protein signature	126	137	IPR001471	GO:0003700\|GO:0006355
	Sebi74g00002	265	PRINTS	Ethylene responsive element binding protein signature	148	164	IPR001471	GO:0003700\|GO:0006355
	Sebi74g00002	265	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	104	195	-	-
	Sebi74g00002	265	ProSiteProfiles	AP2/ERF domain profile.	125	182	IPR001471	GO:0003700\|GO:0006355
	Sebi74g00002	265	SMART	rav1_2	125	188	IPR001471	GO:0003700\|GO:0006355
	Sebi74g00002	265	MobiDBLite	consensus disorder prediction	84	125	-	-
	Sebi74g00002	265	Pfam	AP2 domain	125	174	IPR001471	GO:0003700\|GO:0006355
	Sebi74g00002	265	SUPERFAMILY	DNA-binding domain	125	182	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi74g00002	Sebi-Chr74	157278	158075	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi74g00002	33	188	AP2-EREBP Transcription Factor Family	AT1G80580	51.235	2.28e-28	107

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Sebi74g00002		AP2	3.1e-15	CL0081