Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi749g00015 ATGGATTCAAACACATCAAGCTTTCTTTTGAACTCTTCAACTTTTCACTCAGTTTTCTACCAAGATAAACAGGATGATGGCATAATTGATCTGGGTCTTAGCCTTGGAACTGTTCAACATGAAGCATATCATTCTTCTGGCAACTTGTATGTTGATGACCTTATGGGTTGGCCTCACTCTAATCTCAATCTGAAGAATTCAAGCACAATGCATTCTAGATCTGTCCATGAAAACTTTGATGAAGAGATAGAGGGGGTCCAGAGCAATGAGAGATGGGCATATGTGAAGGTTAACATGGATGGGGTTACCATTGGTAGGAAAATTTGTGTTCTTGATCATGGAGGATACTCAAGTCTAGCAATCCAATTAGAAGACATGTTTGGAAGCCAATCTCTGTGTGGTTTACGATTGTTTCAATCAGGATCAGAGTATTCATTGTTGTACAAAGACAGAGAAGATAATTGGAAGACTGTCGGTGATGTCCCGTGGAAAGAGTTTGTGGAATGTGTCAAGCGGTTGAGGATTGCAAGAAAGAATGGAGGCTTTGTTTCCTGTTCATACACCTAA 567 0.4004 MDSNTSSFLLNSSTFHSVFYQDKQDDGIIDLGLSLGTVQHEAYHSSGNLYVDDLMGWPHSNLNLKNSSTMHSRSVHENFDEEIEGVQSNERWAYVKVNMDGVTIGRKICVLDHGGYSSLAIQLEDMFGSQSLCGLRLFQSGSEYSLLYKDREDNWKTVGDVPWKEFVECVKRLRIARKNGGFVSCSYT 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi749g00015 188 Gene3D - 86 184 - -
Sebi749g00015 188 SUPERFAMILY CAD & PB1 domains 92 175 - -
Sebi749g00015 188 ProSiteProfiles PB1 domain profile. 92 180 IPR000270 GO:0005515
Sebi749g00015 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 48 178 IPR003311 GO:0005634|GO:0006355
Sebi749g00015 188 Pfam AUX/IAA family 52 178 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi749g00015 Sebi-Chr749 274694 275957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi749g00015 82 180 B3 DNA Binding Superfamily AT1G34390 31.313 5.89e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sebi749g00015 AUX_IAA 2e-24 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi749g00015 K14484 - gmx:100777024 339.347