LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi749g00007	ATGTTGAAACTGAAAACTAAGGAAATGGAGAAAGTTTGTGAGTTCTGCACAGCTTTAAGGCCGCTTGTTTACTGTAAGGCTGATGCAGCATATCTTTGTCTATCCTGTGATGCAAAGGTCCATTTGGCAAATGCATTGTCTGGCCGCCACCTCAGGACTCTTGTGTGTAACTCATGCAGATATCGTCTTGCTTATGTTCAGTGCTTGGACCACAAAATGTTAATCTGTCGAGACTGTGATCAAAAGCTGCACAGCGTTTCTTTACCACATCAGAAACGAGCTATCAGAACTTTCATGGGCTGCCCTTCTGCCAAAGACTTTGCAACACTCTGGGGTTTTGAATTGAATGAGATTGAAAGCAGTGTCAATCAGGATCAGTTTGCATCTACTTCTTGTGTTTCTTCAAATTTGAATGTGGTAAAAGTCTCAGGAGGAAAGTCGGGCATTCAAACTGGGGTCCTTTCAATGGTATCTAAGGTCAAACTTGATGGGGGATCGGGTAGTCAACAAGGCCAGATATTGTACTGTGATCAAGAGCGACAAATTATTCTGCAGCAGATTGTTGATTTAAAGCGGTTTCAGCTAAATGAGGAGAGTGATCATTCTACAAAGATAAATGGGTTACAAGAAAAAGACTTATCTCCTTCAGTATATCATACTCTTAAGAAATTGGATGAAAAATTCAATCAGCAAGCACAAAACTCCCAGGATCTTGCTACTAATCTTCTGGAAGAAGACAGTCCCATTGTGGAGCAGAATCCCGAAACTTTCTCTTCTGCGTTTTCTCAACTTGATAATTTGTCTTCATCTTCAGTTATAGACCTTCCTTTGCATGGAGAATTGTTTTGGTCATGCAAAAGTCCACTTAAAAGTAATCAGTTGTGGTCTCAAAACATTCAAGACCTTGGGATATGTGAAGAACTTGTTTGCCAAGATGATTTTAACATACCTGATGTTGACTTAACATTCCAAAACTTTGAGGAACTATTTGGTGGTGATCAAGATCCAATTAGAGTAATGCTTGGTGATAAAGATGTCTCCCGCTCTTCTTTAAAGAAAGACATGTCGGTTGATAAGTCAGATATTGACAATCCAAGTGTAATGGAGGATTCTTTGGCAGCTGCATCCATTACTATCTCCCAATCTCATCGTGAGACCAAGGATATGGATCCTCTCAACCAGAAACCTGCAGCTAATATAAGAAAGATGGTGAAAGGCATTGCTAAGGCAGAAAGGGATGCAAACAAGGTTGTGTATGACTCTTTTGGTGTCAGTGTTTCCTATAGTGATGCAAACAAGATTCCAATTCAAATCAAGTTTAGGACTATGGTCTACAAGCAGCCATTTTCACTTGCAGTTATGTGCATTGAGACTAATAGAGAAAGGGACATTGGGTCCTTAGGCCTTGATAAAACCCAAGAACAGCTAATTCAGCTTTTAGCTATAATAGCATTATGA	1458	0.3985	MLKLKTKEMEKVCEFCTALRPLVYCKADAAYLCLSCDAKVHLANALSGRHLRTLVCNSCRYRLAYVQCLDHKMLICRDCDQKLHSVSLPHQKRAIRTFMGCPSAKDFATLWGFELNEIESSVNQDQFASTSCVSSNLNVVKVSGGKSGIQTGVLSMVSKVKLDGGSGSQQGQILYCDQERQIILQQIVDLKRFQLNEESDHSTKINGLQEKDLSPSVYHTLKKLDEKFNQQAQNSQDLATNLLEEDSPIVEQNPETFSSAFSQLDNLSSSSVIDLPLHGELFWSCKSPLKSNQLWSQNIQDLGICEELVCQDDFNIPDVDLTFQNFEELFGGDQDPIRVMLGDKDVSRSSLKKDMSVDKSDIDNPSVMEDSLAAASITISQSHRETKDMDPLNQKPAANIRKMVKGIAKAERDANKVVYDSFGVSVSYSDANKIPIQIKFRTMVYKQPFSLAVMCIETNRERDIGSLGLDKTQEQLIQLLAIIAL	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi749g00007	485	ProSiteProfiles	Zinc finger B-box type profile.	51	95	IPR000315	GO:0008270
	Sebi749g00007	485	SMART	bboxneu5	8	55	IPR000315	GO:0008270
	Sebi749g00007	485	SMART	bboxneu5	56	95	IPR000315	GO:0008270
	Sebi749g00007	485	CDD	Bbox1_BBX-like	12	55	-	-
	Sebi749g00007	485	PANTHER	ZINC FINGER PROTEIN CONSTANS-LIKE 10	10	342	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi749g00007	Sebi-Chr749	136181	140930	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi749g00007	9	337	C2C2-CO-like Transcription Factor Family	AT1G68190	40.361	2.46e-72	231