Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi749g00006 ATGCTTAACAAGGATGCTTGCTCTCCCTCCTCCAACAGCGGTTTTGGCGCCAACACCGCCGGTCAAATGCAGTCCAGTGGTGGCTCCTTTGGTTCCTTCTACTCCGCTTTATCGAATGATAATCTCTCAGGAAACTGCAGCAACGGCAGCGGCGTCTCGCTTTACCCCTACTCTGACTCGGCAACTCAGTACGACTCGTGCGTCATACAGAAGCACCAGGATATGGTGAATCGGCACAGCATGTGCCTCACTCGCCTTGTGGAAACTTCCAAAGAGGTGGAAGCTCTGCGGCAAGAGAATAGCCAACTCCGTTCTATGAACAAGGAGCTGCAGAAGCAGTTGAATCTCGTTGTCCAGGCTTCGCTGGAGAATCGATTCGGCGGCGGTTCCTCCGGCCAGAATCAGACGACACCGTTTGACATCTTGCATGGGTTCCGTAGAAGTTCGGACGAGAGTCCAACCAGCGTGATTGAGAATAACGGTGTTGAAGTGGAGAGATTCGCGCTGCCTAAGAGCATATCTGTGAGGTCCAATGGCTACTTGAAGATGGCTCAGTCTGCAAACGTTGCCACCAATAATGCTTGTCGCACCAAGGGTGCTACTCGCCCACGCACGTCCTCCACTCCACCTGATGCCGTTCAAAAGGTATATGTTCGAGGAGGGCAGAAAGAAGAAGAGCCTCTTGAGATGGTAGTGTATAACCAAGGGATGTTCAAGACTGAGCTGTGTAACAAATGGCAGGAAACGGGCACTTGCCCATATGGAGACCACTGCCAATTTGCTCACGGTATTGGGGAGCTGCGCCCAGTCATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTATGCCCATATGGCCACAGATGCCATTTCCGCCATGCACTTACTGAACAAGAGAAAGCTATGTCACAACCTAAGCCCAGAACAACCAAGCTGGAAAGATAA 966 0.5217 MLNKDACSPSSNSGFGANTAGQMQSSGGSFGSFYSALSNDNLSGNCSNGSGVSLYPYSDSATQYDSCVIQKHQDMVNRHSMCLTRLVETSKEVEALRQENSQLRSMNKELQKQLNLVVQASLENRFGGGSSGQNQTTPFDILHGFRRSSDESPTSVIENNGVEVERFALPKSISVRSNGYLKMAQSANVATNNACRTKGATRPRTSSTPPDAVQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAMSQPKPRTTKLER 321
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sebi749g00006 321 SMART c3hfinal6 237 264 IPR000571 GO:0046872
Sebi749g00006 321 SMART c3hfinal6 275 302 IPR000571 GO:0046872
Sebi749g00006 321 Gene3D - 232 270 - -
Sebi749g00006 321 Gene3D - 271 307 - -
Sebi749g00006 321 FunFam zinc finger CCCH domain-containing protein 15-like 231 270 - -
Sebi749g00006 321 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 238 263 IPR000571 GO:0046872
Sebi749g00006 321 ProSiteProfiles Zinc finger C3H1-type profile. 275 303 IPR000571 GO:0046872
Sebi749g00006 321 ProSiteProfiles Zinc finger C3H1-type profile. 237 265 IPR000571 GO:0046872
Sebi749g00006 321 FunFam Zinc finger protein 36, C3H1 type-like 1 271 307 - -
Sebi749g00006 321 SUPERFAMILY CCCH zinc finger 234 269 IPR036855 GO:0046872
Sebi749g00006 321 Coils Coil 86 116 - -
Sebi749g00006 321 PANTHER CCCH ZINC FINGER/TIS11-RELATED 72 311 IPR045877 GO:0003729
Sebi749g00006 321 SUPERFAMILY CCCH zinc finger 271 305 IPR036855 GO:0046872
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Sebi749g00006 Sebi-Chr749 131307 133221 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi749g00006 57 310 C3H Transcription Factor Family AT1G68200 53.986 2.67e-88 265
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi749g00006 zf-CCCH 2.5e-12 CL0537