Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi748g00020 ATGGAACGGGTGGTGGCAACGGTGAGTGGTTACCATGGCTCGGAGCGGTTCAACCTGATCAAGCTGATTTCACATTCTGGAGCCAACTACGTTGGGGCCATGTCAAAATCAATAACACACCTGGTGTGTTGGAAGTTTGAAGGAAAGAAATATGATATTGCTCGAAAGTTTAGAATACATATAGTTAACCACCGATGGATTGAAGATTGCATCAAGGAAGGAAGGCGTGTCCCAGAAGATTCTTATATCTTGCAAAGTGGATTTGAAGTAGGGCCGTTGATACTGGAAGTTCCGGTCACTGTTCAAACAGGTAGCATAACGAAGAATAAAGTTGTTATCGACCTCAGTTCTGAAGTTTGTGGAAATTCTGTTCTGGAAGATTCTTGCTTATTGAAAAAGCATGAGGAGTCAAGTTCGTATTCATCTAGACTGTCAAGGAAAGGAAAAAGAAATGTTTGCAGTGGTAGTGGAACTAGTACTGCGTCCGGACTTTCTCGTAAAGGAAGAAGGCTGATGAAAAATGTTGTTGATGAAGTGGGATTGGATCCTTTAATTTTGGATTTAAGCTCAGATGACCACCTTTGCAGAATGGATAGACTACACACTGAAGCTGCAGCTACGTCTAGCCTTTCTGGTGGTGCCAATACTAACAATATTCAAGAAAATAATGAAGGAACCAATGTTCGATTATGTAATCAAAGTACAACTGTCAATGGAGGTTCAGATGGCATTGAGCAGAACAAAGATTCAAATCATATATCTACTCTTAGTAGTTCAACTTTGTTTATAGAAGATCCCTCACCTGTGGCCCAAACATCAACAGATTTATGTTCCAATGCTGAAAAGGTCACAGATAATGATCAAGTTGATAGCATTGCTGGCTTGCCTACTTCAGATGAGCTGTCATGTGTTATATGTTTCACAGATTTCAGTTCAACAAGGGGGATTTTGCCGTGTGGACATCGATTTTGTTTCCCATGCATCCAGAGTTGGGTTAATCATAGGACTTCAATGGGAAAAATATCAACCTGCCCTTTGTGCAAGGCAAGTTTTGTGATGATCAAGAAAGTTGAGCATGCAGCCACCACTGATCAAAAAGTATACTCCCAAACAATCCCATGTGACAATTCCGCTTCAGATATTTTTCTCCCCATGGATCAAGAATTACCTGATAATAGCTTCGAGTCCTCACAGGCAGGCGCTTGTGTAGTTTGCCGTGGTCGGGAGCCTGAAGATTTACTTGAGAATTGCGATATTTGTCGGACTCGAAGAATCCATTCCTATTGCATGGACCCTCCTTTAAGGCCTTGGACATGCAGTCACTGCAAGGAACTTAGGATGCTTTATCGTAATCACTCTTATTAG 1365 0.4154 MERVVATVSGYHGSERFNLIKLISHSGANYVGAMSKSITHLVCWKFEGKKYDIARKFRIHIVNHRWIEDCIKEGRRVPEDSYILQSGFEVGPLILEVPVTVQTGSITKNKVVIDLSSEVCGNSVLEDSCLLKKHEESSSYSSRLSRKGKRNVCSGSGTSTASGLSRKGRRLMKNVVDEVGLDPLILDLSSDDHLCRMDRLHTEAAATSSLSGGANTNNIQENNEGTNVRLCNQSTTVNGGSDGIEQNKDSNHISTLSSSTLFIEDPSPVAQTSTDLCSNAEKVTDNDQVDSIAGLPTSDELSCVICFTDFSSTRGILPCGHRFCFPCIQSWVNHRTSMGKISTCPLCKASFVMIKKVEHAATTDQKVYSQTIPCDNSASDIFLPMDQELPDNSFESSQAGACVVCRGREPEDLLENCDICRTRRIHSYCMDPPLRPWTCSHCKELRMLYRNHSY 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi748g00020 454 Pfam Zinc finger, C3HC4 type (RING finger) 303 347 IPR018957 GO:0046872
Sebi748g00020 454 SUPERFAMILY RING/U-box 295 355 - -
Sebi748g00020 454 ProSiteProfiles Zinc finger RING-type profile. 303 348 IPR001841 -
Sebi748g00020 454 ProSitePatterns Zinc finger RING-type signature. 319 328 IPR017907 -
Sebi748g00020 454 SUPERFAMILY FYVE/PHD zinc finger 391 445 IPR011011 -
Sebi748g00020 454 SMART BRCT_7 1 74 IPR001357 -
Sebi748g00020 454 SMART ring_2 303 347 IPR001841 -
Sebi748g00020 454 Pfam twin BRCT domain 4 66 IPR001357 -
Sebi748g00020 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 373 IPR013083 -
Sebi748g00020 454 Gene3D BRCT domain 1 83 IPR036420 -
Sebi748g00020 454 MobiDBLite consensus disorder prediction 141 165 - -
Sebi748g00020 454 MobiDBLite consensus disorder prediction 144 165 - -
Sebi748g00020 454 SUPERFAMILY BRCT domain 2 85 IPR036420 -
Sebi748g00020 454 PANTHER F5A8.9 PROTEIN 122 451 - -
Sebi748g00020 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 453 IPR013083 -
Sebi748g00020 454 ProSiteProfiles BRCT domain profile. 1 84 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi748g00020 Sebi-Chr748 363846 368849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi748g00020 38 90 Core DNA Replication Machinery Family AT4G02110 51.852 2.08e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi748g00020 - - gmx:100815034 660.218