Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi748g00006 ATGGAGATGCCAAGAGGAGAAGCTGTTCTATGTTTTGTGGCATTGTTCTGGTTTTGGAGCTCTGCAAATGCCTTGCTTTCTCCTAAGGGAATAAACTTTGAAGTGCAAGCTTTAATGGGCATAAAAGCTTCTCTAGTGGATCCTCATGGTATTCTAGATAATTGGGATGGGGATGCAGTTGATCCATGTAGCTGGAATATGGTCACATGTTCCCCTGACAACCTTGTCATTAGCCTGGGCATTCCCAGTCAAAATTTATCTGGTACTTTATCTCCAAGTATAGGAAACCTAACAAATCTTCGAACTGTGGTGCTACAGAACAACAACATAACTGGACCAATCCCTTCAGAGCTGGGAAAACTTTCCAAGCTTCAAACTCTTGATCTTTCTGATAACTTCTTCAATGGGGAAATTCCTCCCTCTCTGGGTCATCTGAGAAGCCTCCAGTACTTGAGGCTCAACAATAACAGTTTTTCTGGGGAATGTCCAGAGTCACTGGCTAACATGTCACAGCTTGCTTTCCTTGACTTGTCCTTCAACAATTTGAGTGGTGCTGTACCTAAAATTTTGGCCAAATCATTCAGTATTGTTGGAAACCCTCTTGTCTGTGCTACAGGAAAAGAAACAAACTGCCGTGGGATGACACCCATCCCTATGTCCATGAACTTAAACAGTTCTGAGGATGCTTTAACATCAGGCAGACCAAAAGCTCACAAATTGGCCATTGCCTTTGGTTTGAGCCTAGGATGCCTCTGCTTATTAGTTCTTGGTTTTGGATTTTTTCTATGGAGGAGGCACAAGCATAATCAACAAACATTCTTTGATGTTAAAGGTAAACCAGTCTTGGACTGGGGCACAAGAAAGCAAATTGCCTTAGGAGCAGCAAGGGGACTATTATACCTCCATGAGCAGTGTGATCCAAAGATAATCCATAGAGATGTGAAAGCTGCTAATATATTGCTTGATGACTATTGTGAGGCAGTAGTTGGAGATTTTGGGTTGGCAAAGCTTTTAGATCACCAAGATTCACATGTCACAACTGCAGTGAGGGGCACAGTAGGGCATATTGCACCAGAGTATCTTTCCACAGGACAGTCTTCTGAAAAGACTGATGTCTTTGGATTTGGCATTCTGCTTCTTGAATTGATCACAGGCCAGAGGGCTCTAGAATTTGGAAAGGCAGCCAACCAAAAAGGAGCCATGCTTGATTGGGTAAGGAAAATCCATCAGGAGAAGAAGCTTGAGTTGCTTGTTGACAAGGATCTCAAGAACAACTATGACAGGATTGAGCTTGAGGAAATGGTTCAAGTGGCACTCTTGTGTACACAATATCTTCCAGGCCATAGACCAAAAATGTCTGAAGTTGTACGTATGCTTGAAGGTGATGGATTAGCAGAGAAATGGGAAGCTTCTCAAAGTGCTGACACTAACAAGTGCAAACCACATGAGTTCTCTTCATCAGATCGGTATTCTGATCTTACTGATGACTCTTCATTGTTAGTCCAGGCCATGGAGCTTTCAGGTCCTAGGTGA 1533 0.4292 MEMPRGEAVLCFVALFWFWSSANALLSPKGINFEVQALMGIKASLVDPHGILDNWDGDAVDPCSWNMVTCSPDNLVISLGIPSQNLSGTLSPSIGNLTNLRTVVLQNNNITGPIPSELGKLSKLQTLDLSDNFFNGEIPPSLGHLRSLQYLRLNNNSFSGECPESLANMSQLAFLDLSFNNLSGAVPKILAKSFSIVGNPLVCATGKETNCRGMTPIPMSMNLNSSEDALTSGRPKAHKLAIAFGLSLGCLCLLVLGFGFFLWRRHKHNQQTFFDVKGKPVLDWGTRKQIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVRKIHQEKKLELLVDKDLKNNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASQSADTNKCKPHEFSSSDRYSDLTDDSSLLVQAMELSGPR 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi748g00006 510 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 470 - -
Sebi748g00006 510 FunFam Somatic embryogenesis receptor-like kinase 1 269 479 - -
Sebi748g00006 510 ProSiteProfiles Protein kinase domain profile. 148 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi748g00006 510 Gene3D Transferase(Phosphotransferase) domain 1 264 479 - -
Sebi748g00006 510 SUPERFAMILY L domain-like 34 196 - -
Sebi748g00006 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Sebi748g00006 510 SUPERFAMILY Protein kinase-like (PK-like) 276 465 IPR011009 -
Sebi748g00006 510 SMART serkin_6 195 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi748g00006 510 SMART LRR_typ_2 169 192 IPR003591 -
Sebi748g00006 510 SMART LRR_typ_2 97 121 IPR003591 -
Sebi748g00006 510 SMART LRR_typ_2 145 168 IPR003591 -
Sebi748g00006 510 Pfam Leucine Rich repeats (2 copies) 98 139 IPR025875 -
Sebi748g00006 510 Pfam Protein kinase domain 282 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi748g00006 510 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 213 - -
Sebi748g00006 510 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Sebi748g00006 510 MobiDBLite consensus disorder prediction 470 492 - -
Sebi748g00006 510 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi748g00006 Sebi-Chr748 152220 155807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi748g00006 276 510 Receptor kinase-like Gene Family AT5G16000 87.137 1.49e-143 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Sebi748g00006 Pkinase 6.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi748g00006 - - gmx:100806650 462.611