Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi747g00003 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAGGCAGCACTGAAAGCTGGAGTAGTCAAACATGGGGCAGGAAAATGGCGCACTATACTTACAGATCCCGAGTTCAGTGCTATTTTGCGGATGCGATCAAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCCCTTAAAAGGAACCTTCCAGCCCCCAAAATTGACAATAACCATTTGGCCTTGAGTACAGTAGTTCGACGTGAAGTTCACGATACTAAGCCCTTAGCAATTACTGGTGGAACATTGCAATCTCCCAATTCAAAAGAACAAATATCAAGGTTCAAGAGGTTCCAGTTGGGGGATAATCATATATTAGAGGCTGTTGTTAGTATGAAGGAGCCAAAAGGTTCTGACAGGGCTGCCATTGCTTCTTACATAGAGGAAAAATATCGGTGTCCACCAAACCTCAGAAAGTTACTATCATCAAAACTGAAGCTTATGGTGGAAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGAATTACGCCAAGTTCAACAGTCACTGAGAAAAGAAGATGCTCTTCCTTGATACATGTGGAAGGGAGGCCCAAAGATTCTCCAGAAGCAAAGAGTGATGATGTTAACATCCTTTCAAAATCCCAAATTGATGCTGAGCTATCAAAAGCGAAGGGCATGACAGCTCAAGAAGCAGCTGCTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGTTGCCATTGCACAGGCTGAGGCTGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCAGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAGTGAAGGCGCTAAAATGCAAAATGCTTCATATTTGTCCTCAGTCAGTCACTCCTTTGGCATCTTCACATTCTCATATTTTACTTTTTGCTCTTGATGGTGCGGACTTGTGCTTGCTTGTTATCAGCCGAGTTGGCTTGAGATAA 1005 0.4428 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKIDNNHLALSTVVRREVHDTKPLAITGGTLQSPNSKEQISRFKRFQLGDNHILEAVVSMKEPKGSDRAAIASYIEEKYRCPPNLRKLLSSKLKLMVESGKIIKEKHKYRITPSSTVTEKRRCSSLIHVEGRPKDSPEAKSDDVNILSKSQIDAELSKAKGMTAQEAAAAAAKAVAEAEVAIAQAEAAAREAEAAEAEAEAAQVFAKAAVKALKCKMLHICPQSVTPLASSHSHILLFALDGADLCLLVISRVGLR 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi747g00003 334 CDD H15 131 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi747g00003 334 Gene3D - 2 59 - -
Sebi747g00003 334 SUPERFAMILY "Winged helix" DNA-binding domain 129 200 IPR036390 -
Sebi747g00003 334 Coils Coil 246 283 - -
Sebi747g00003 334 SMART h15plus2 127 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi747g00003 334 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Sebi747g00003 334 PANTHER SINGLE MYB HISTONE 4 1 294 IPR044597 GO:0003691
Sebi747g00003 334 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 191 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi747g00003 334 CDD SANT_TRF 6 57 - -
Sebi747g00003 334 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Sebi747g00003 334 Pfam linker histone H1 and H5 family 131 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi747g00003 334 Gene3D - 128 200 IPR036388 -
Sebi747g00003 334 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Sebi747g00003 334 SMART sant 4 59 IPR001005 -
Sebi747g00003 334 FunFam Telomere repeat-binding factor 1 2 58 - -
Sebi747g00003 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi747g00003 Sebi-Chr747 17263 21292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi747g00003 1 295 Single Myb Histone (SMH) Gene Family AT5G67580 53.041 7.60e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi747g00003 Linker_histone 1.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi747g00003 K09422 - gmx:100779583 392.889