Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi745g00039 ATGTCAGATTCACAGTCAAATTCAGAGATTTTCAGTGTTCGTATTGTCTCCATCGACTATTACATAGCACCGCCTATCCCAGGCGCGGATATCTGTTACAGCAGCTTCCATGGTGGAAAAGTGAACGAGGTCCCAGTAATAAGAGTGTATGGTTCAACTCCTGCTGGCCAGAAGACTTGCTTGCACATACATGGAGCTTTACCTTATATGTATGTGCCGTGTTCAGATATACCACTTCAATTAGACCAAGAAGGTGATGCATACACCTATAAGCTAGCTGCTTCTCTTGATAAAGCCTTGAAGGCTGGTGCCGTTCTTGATAAAGGTTTACAGCCACATGAATCACATATTCCCTTCATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTGCACCTATCAAAGATGAGGTTCCGCCATCCCATACCAGATTCTTCTCACAAGAAATCAATTATTGATAGCCAGCATAGAAAGGCAGATCCGGATACTGATGCATGTTTAGAGTCAAAAGTGTGGATGTCTTCCATGATCCCATCTGACTGGATGTGGTCAGCCCCTAGTGAATTTGGTGCTTTGTCAAATGATAAGACTCACTGCCCTAAACGTCAAAGCATCTGTGAGCTTGAAGGAGATACTTCTGTAGATGAGATTCTTAATCAGCAGTTTAAAATGTATTCATCTCTCTCACAAACATGCTCAGATGTCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAGCAAAAACGAGCTGGGATTCGTGAGGCTACCATGCCTTCTGATCCTGGCAAACCACTTCCAGAAGATGTCATGAAACTTCTCTCTGTTGGTCTTGACTTTGAGAAAAAACTTATTGAATTGTGCAGTGAAGCTGAAACCTCTTTACTCTGTACTCCTTCTGAGAGGGAATTTAGAGAAACAGACATAATAGGTTCAGCATCACCACCAGCTTCATTGTGTGAAAAAGCCAAATTGCTTGAGGAAGGGACTGACACAGGTCTCAAATTGTTGACTATTGATGAAATGCAAACATCTGAAAAGATTGGAATGGTTGGGGCTGCTGATAAGGAAGCACAAAATCTTCTTAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATAAACTCTGATGATGAACTTCTTTGTGAAACGATCTTGAGTCCCTTGTTACCTGCTGCAACAATTGATAAGGTGCTGGAGAAAGCTAATATGGCTTATGAGAGTGAGTCTCAGAAGGAGTGTCAGGATATTCTAGATTCAATTGATGATATGCTTGAATTGGATTTTCCAAAGGAAAAGCCTTCTTGTTCTGTAGATCACAATAGTCCTGTTAAGGCTTCATCAAACAGTATGATACCCCAAGTTGATGGTTCTAATGATGATGAATGCTCAAGTCCACGTGCTAGTTTGACTGGAACCTCTTCTGCAGTAGAGATAAACAGTGAATACAAAAGGGCTTCTGAGTGCCATATGCACAATACTGACACAAATATAGTTAGTACAGATAAAACGAATAAACAATGGGGGTCCTTGCCTTTTTCCATGACCAGTAAGGTTAATAATGATGGAGAGCATGCTACTTCACATCTGACCCATCCATTTGAAAGTGAAACTGGAGATTCTTCTCATTCAGATTACTTAACCAGAAGAAATAATGCTTGTATTATTAGAAAAGTGGGCGAAGGTGCTTCAGATTCAAAAGAAGTACATAGATTGGCTAGCTGCTCATTGCGGGACTTGATGAGGCGAAAGCGATCCTATCGAGTTGAACATGCTGAACATGAAACTGGAACTACTAAAAAACTTCTTTTAAATAGGCATGGGGGCCTTTGGCAAAAACAACTGGATATGAGAAAAATTCAAACCGATGAAGAAGAAACAGAGTGCCATAAAGATTGTGATCTTAAAGTGAGCAATCGTGATAATTTAGTTTGTGGGAAATTGTCACTACCTGCTGGCAGTAAAAGGTTTTTACAGGCTAGTATGCCAAGAGATGAATGTTTTGATCCCCATGAAATGGAGTGTCTAGAAGCAAGTATGGTGTTGAGGAACTCCACAAATGGAGGTTCTTCTTTAATGAGTGAAGGACCAGGCATCCATAAACTCGAAACTTTATGTTCTATTGATTCCATAGACCAATCTATAGCTTGCAGGGATAAAAACATTTTGGTTGGAACAGCTTATGCAAAACCTGTAGCTTCTGATGCCTATACCTCAAATCCAATTTTAGACACTCAGTTGAGAATGGATGCTGATCATAATGTCGGAGCTCCTGAGAGGAGTCAGCATACTGATTCTGCTGCTTCAAGTAGTGTACAGAACTCATCCATTGATGATAAAATGTCAGGCAAACATTATTGCATGGATCAAAGTTCTTGTATATGTTTTATGCAACATGATCAGATGAAGTTTTATGAGCATGCTGTGAGCATAAGTGCTGCAAGTGACACACAAGTATTGCTAAGTGAAAAAGTTGATAATCAAAAGATGGGTACAAATTTGTTGCATGAGACCATTGGCTCAAAATCCATTGCTGATGACATGAAGGGCGATCACGTGAAATTAAATGAAATAACCACAGGCAAGAATCTTGAAAGTAATCTTCCCTTGCCAACTGTCTCTAACACCCATTTACATTTGGATGAGGACAGCTGTGATGAACTGCCAGGGAATGCTCGGGATGTTTTCCTTCCATTTTCTGGAAGGGATTCCCCAAAAGAGAAGGAAACTTGGGACAACTGTGTTTCAATTAAAACCCACAGATCTAATGGGACAAAGGGTATTACCACTCACTATCAAAACGATGGCTCTCACCTCTACTTATTAGCACCTAATATTTTGCCTCCTTCTGCGGGTTCTGTGCAGAGATGGCTATTTTATAATGAGAGAGAACCTGATACAGAGGACAAGGATGTACCTAATTGTGCTTCTGCACCTCCTCGTGGGCCTGAGCTGTATCAAGATGCTGGTTCAGAACAGAAGCCTCCATGCATTAGTGAAGGACAAACAAAAAGAGTAAAAGCAAGTCTAGATGGCTCACAAGATATTTCTCAGATATCAGGCCCTGATGGGAAATCAAGTTTTACCCCCCTTAGTCAAATCGGATTTCGAGACCCTGCAAGTGTTGGCCATGGACAGCAATTGACATTACTTAGTATAGAGGTTCTTGCAGAATCTAGAGGAGACCTTTTACCTGATCCTCAATTTGATGGCATCAACATTGTAGCTCTTGGTTTTCAGAATGATAGTGATTCTATTATTGAAGTTCTTGTTCTTTTGCATAGTAAATTTGACCCTTGTCAGAGAAGTTATGATGGTCTATCAGGCTGCAGAGTATTGGTCTTCACAGATGAGAAGCACTTGTTGAAAGAATTTATAAAGATTGTGTCTTCATCTGATCCAGATATTTTGATGGGTTGGGATGTTCAGGGGAGTTCTCTTGGTTTTCTAGCAGAAAGGGCTTCACATCTTGGTTTAGGATTACTTAATGGTTTGTCTCGCACTCCATCTGATTCTTGGAGTGCTTCTGAAGACACCAAAACTTCTGAGAAAGGTATTGTGGACCTGGACATCCCTGATACCCCCAGTCTACATAGTTGTACACAAGAAAGTTCAATAATTGAGGATGAATGGGGACGAACACATGCCAGTGGAGTTCATGTAGGTGGCAGAATTGTCCTTAATGTATGGCGATTGATTCGTGGAGAAGTTAAGCTGAATTTGTATTCAGTTGAAGCTGTAGCTGAAGCTGTATTGAGGCGGAAAATTCCTTTATTTCATCACAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCTGGACGAGCAAGACATCAGTGTATGAAATATCTTATAGAGAGAGCAAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGACTTTTTCTCTGTTCTCTCTCGAGGTTCACAATATCGTGTTGAATCCATGTTTTTGAGGTTGGCCCATACACAAAACTATGTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCTATGGAATGCCTGCCGCTAGTGATGGAACCAGAGTCAGGATTTTATTCAGATCCTGTTGTTGTTCTTGATTTCCAATCTTTATATCCATCAATGATAATTGCATACAACCTTTGCTTTTGTACATGTCTTGGCAAAGTTGTGGCATCAAAGGCTAACACACTTGGGGTTAGTTCATTTTCACCAGAGCAACATGTTCTTCAGGATCTAAAAGACCAAATCTTGCTCAGTCCAAATGGTGTTATGTTTGTACCTCCCAAGGTTAGAAGAGGGGTTCTGCCTCGCTTATTGGATGAAATCTTATCAACTAGAATAATGGTAAAACAAGCAATGAAAAAGTTGGCTCCTTCAGAGCAAGTTCTTCAGCGGATATTTAATGCAAGACAACTTGCTTTGAAGCTTATATCAAATGTAACATATGGTTACACTGCTGCTGGATTTAGCGGTCGGATGCCTTGTGCAGAACTTGCAGACAGTATCGTTCAATGTGGCCGTAGTACACTGGAAAAGGCTATATCATTTGTGAATCTACATGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAAAGGACGCACTATCAAAGAGTCCTTCCAAATTGGGAGTGAGATTGCTTCTACTATCACTGCTATGAATCCCAGTCCTGTTACCCTGAAGATGGAGAAAGTTTATCATCCGTGCTTCCTCCTTACTAAAAAGCGTTATGTTGGCTACAGTTATGAAAGCCCTGATCAAATTGAACCCGTTTTTGATGCTAAAGGTATTGAGACAGTACGCAGGGACACATGTGGTGCAGTTGCAAAGACAATGGAGCAGTCTTTGAGACTCTTTTTTGAACATCAAGATTTATTGGAGGTGAAGACTTATTTGCAGCGTCAGTGGAAGAGGATTCTTTCAGGCAGATTCTCCCTTAAAGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCTACTAAGGCAATGAGGATTGATCCTAGGGCAGAACCACGTTATGCTGAGAGAATACCTTATGTTGTAATCCATGGAGAGCCCGGAGCCCGCCTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCCCCATTTAGAATAAATGATTTATATTATATTAATAAACAAATAATACCAGCTTTACAGCGGGTGTTTGGGCTTGTTCGTGCTGACCTGAACCAGTGGTTTGCAGAGATGCCCCGCCCTATAAGGGAAGCTTCTGCAAAGCATACCTTCGCTCCAAATTCCCATCGAACCAGAATTGATTCTTACTATCTCTCAAAACATTGTGTACTGTGTGGTGGGTTGGTCCAGGCATCAGCTCGTTTATGTAGTCAATGTTCTGAAAATGAAGTAGCTGCTGCAACAGCAGTGATTAGTAAGACTAAAAATTTAGAGCAAGAGATGCAACGCCTTGTTGCTATATGTCACCATTGCGGAGGCGGGGATAGGCTTCTCGAAAGTGGTGTAAAGTGCACGTCCATTTCTTGCTCGGTGTTCTATGAGAGGCGGAAAGTTCAGAAAGAACTACTAGCTGCCACCAATGTTGCTACAGGTAAAGGCTTCTATCCAAGATGTACGATGGAATGGTTCTGA 5739 0.4114 MSDSQSNSEIFSVRIVSIDYYIAPPIPGADICYSSFHGGKVNEVPVIRVYGSTPAGQKTCLHIHGALPYMYVPCSDIPLQLDQEGDAYTYKLAASLDKALKAGAVLDKGLQPHESHIPFILQFLVDYNLYGMGHLHLSKMRFRHPIPDSSHKKSIIDSQHRKADPDTDACLESKVWMSSMIPSDWMWSAPSEFGALSNDKTHCPKRQSICELEGDTSVDEILNQQFKMYSSLSQTCSDVNMVQSLVPIWEEQQKRAGIREATMPSDPGKPLPEDVMKLLSVGLDFEKKLIELCSEAETSLLCTPSEREFRETDIIGSASPPASLCEKAKLLEEGTDTGLKLLTIDEMQTSEKIGMVGAADKEAQNLLKWLATSQAAEDINSDDELLCETILSPLLPAATIDKVLEKANMAYESESQKECQDILDSIDDMLELDFPKEKPSCSVDHNSPVKASSNSMIPQVDGSNDDECSSPRASLTGTSSAVEINSEYKRASECHMHNTDTNIVSTDKTNKQWGSLPFSMTSKVNNDGEHATSHLTHPFESETGDSSHSDYLTRRNNACIIRKVGEGASDSKEVHRLASCSLRDLMRRKRSYRVEHAEHETGTTKKLLLNRHGGLWQKQLDMRKIQTDEEETECHKDCDLKVSNRDNLVCGKLSLPAGSKRFLQASMPRDECFDPHEMECLEASMVLRNSTNGGSSLMSEGPGIHKLETLCSIDSIDQSIACRDKNILVGTAYAKPVASDAYTSNPILDTQLRMDADHNVGAPERSQHTDSAASSSVQNSSIDDKMSGKHYCMDQSSCICFMQHDQMKFYEHAVSISAASDTQVLLSEKVDNQKMGTNLLHETIGSKSIADDMKGDHVKLNEITTGKNLESNLPLPTVSNTHLHLDEDSCDELPGNARDVFLPFSGRDSPKEKETWDNCVSIKTHRSNGTKGITTHYQNDGSHLYLLAPNILPPSAGSVQRWLFYNEREPDTEDKDVPNCASAPPRGPELYQDAGSEQKPPCISEGQTKRVKASLDGSQDISQISGPDGKSSFTPLSQIGFRDPASVGHGQQLTLLSIEVLAESRGDLLPDPQFDGINIVALGFQNDSDSIIEVLVLLHSKFDPCQRSYDGLSGCRVLVFTDEKHLLKEFIKIVSSSDPDILMGWDVQGSSLGFLAERASHLGLGLLNGLSRTPSDSWSASEDTKTSEKGIVDLDIPDTPSLHSCTQESSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVEAVAEAVLRRKIPLFHHKVLTKWFSSGPGRARHQCMKYLIERAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYVAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQHVLQDLKDQILLSPNGVMFVPPKVRRGVLPRLLDEILSTRIMVKQAMKKLAPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLKGRTIKESFQIGSEIASTITAMNPSPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQIEPVFDAKGIETVRRDTCGAVAKTMEQSLRLFFEHQDLLEVKTYLQRQWKRILSGRFSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRIDPRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVRADLNQWFAEMPRPIREASAKHTFAPNSHRTRIDSYYLSKHCVLCGGLVQASARLCSQCSENEVAAATAVISKTKNLEQEMQRLVAICHHCGGGDRLLESGVKCTSISCSVFYERRKVQKELLAATNVATGKGFYPRCTMEWF 1912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi745g00039 1912 Gene3D - 1620 1783 IPR042087 -
Sebi745g00039 1912 MobiDBLite consensus disorder prediction 765 784 - -
Sebi745g00039 1912 Gene3D Palm domain of DNA polymerase 1364 1609 IPR023211 -
Sebi745g00039 1912 FunFam DNA polymerase 1060 1361 - -
Sebi745g00039 1912 CDD DNA_polB_zeta_exo 1050 1300 - -
Sebi745g00039 1912 Gene3D DNA Polymerase, chain B, domain 1 30 90 - -
Sebi745g00039 1912 Gene3D DNA Polymerase, chain B, domain 1 91 144 - -
Sebi745g00039 1912 Pfam DNA polymerase family B, exonuclease domain 1069 1191 IPR006133 -
Sebi745g00039 1912 PRINTS DNA-directed DNA-polymerase family B signature 1543 1551 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi745g00039 1912 PRINTS DNA-directed DNA-polymerase family B signature 1378 1391 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi745g00039 1912 PRINTS DNA-directed DNA-polymerase family B signature 1487 1499 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi745g00039 1912 Gene3D - 1084 1361 IPR036397 GO:0003676
Sebi745g00039 1912 MobiDBLite consensus disorder prediction 437 477 - -
Sebi745g00039 1912 ProSitePatterns DNA polymerase family B signature. 1545 1553 IPR017964 GO:0000166|GO:0003676
Sebi745g00039 1912 MobiDBLite consensus disorder prediction 533 549 - -
Sebi745g00039 1912 MobiDBLite consensus disorder prediction 445 477 - -
Sebi745g00039 1912 FunFam DNA polymerase 1620 1788 - -
Sebi745g00039 1912 SUPERFAMILY DNA/RNA polymerases 1365 1778 IPR043502 -
Sebi745g00039 1912 Gene3D Helix hairpin bin 1445 1504 - -
Sebi745g00039 1912 FunFam DNA polymerase zeta 1445 1504 - -
Sebi745g00039 1912 SUPERFAMILY Ribonuclease H-like 35 1346 IPR012337 -
Sebi745g00039 1912 Pfam DNA polymerase family B 1319 1766 IPR006134 GO:0000166|GO:0003677
Sebi745g00039 1912 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 100 1905 IPR030559 GO:0006281|GO:0016035|GO:0019985
Sebi745g00039 1912 SMART polmehr3 1051 1557 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi745g00039 1912 MobiDBLite consensus disorder prediction 760 784 - -
Sebi745g00039 1912 CDD POLBc_zeta 1326 1774 - -
Sebi745g00039 1912 MobiDBLite consensus disorder prediction 969 1006 - -
Sebi745g00039 1912 MobiDBLite consensus disorder prediction 529 550 - -
Sebi745g00039 1912 Pfam C4-type zinc-finger of DNA polymerase delta 1811 1884 IPR025687 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi745g00039 Sebi-Chr745 396053 413830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi745g00039 1089 1894 Core DNA Replication Machinery Family AT5G63960 29.201 3.66e-87 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi745g00039 K02350 - gmx:100777934 2978.35