Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi745g00035 ATGGCACTCGGTAGGTACACTGCATGTTTGAGTGTTGAGGACGGGGTCCTCTACTCTGCCGTGGAGGATTCCCGTGCCGTGGCAGAGACTTGTGATGAGTTAGTTGTTCTTGTTGATTGGGATACGGGATATGAGGGCACTGGAGTTTCAGGACCCGGTTTGATTCCAAAGCGGTTTGTCTGGCCTCATGGGGGAAGAGGGGTGTCTCTAATTGGTTCTTTCACGAGTTGGTTAAAACACATACCTATGTCTCCGATGGAGGGATGCCCTGCAGTATTTCAGGTTACCTGCAGCTTAACGCCGGGATATCATCAGTACAAATTTATTGTTGATGGTGAGTGGCGGCATGATGAGCAGCAGCCATTTGTAAGTGGGAGCTACGGATTAGTGAATGCTATTTACTTAATGAGGGAACCGGATGTTTTACCTTCCATCTTAAGTGCTGAAACACCTGGTAGATCCCACATGGAGGTTGATAATGATGTCTTTGGGCATGCAGGAGCTAATCCAAGGATGACAGAGCATGATCTGGAGGTCTCTCGGCACCGTTTATCTGTATTCTTGTCTACACATACTGCATATGATTTGCTTCCTGAGTCAGGGAAGGTCATTGCCTTGGATATAAATTTACCAGTTAAGCAAGCATTCCATGTTCTGTATGAACAGGGCGTATCTATGGCTCCTCTATGGGATTTTTGCAGGAGTCAGTTTGTTGGAGTGCTTAGTGCAATGGACTTTATTCTAATATTGAAAGAGCTGGGGAATCATGGATCAAATTTGACTGAAGAACAACTTGAGACTCATACTATAGCAGCCTGGAAAGAGGGAAAATTACAGCAACGCAGAACAGTTGATAGTAATGGGGGATCATATCCTTGGCGTTTTGTTCATGCTGGACCCCATGAATGTCTGAAAGATGTGGCTTTGAAGGTTTTGCAAAACAAGATATCAACAGTTCCTATCATCCATTCTTCTTCAGAGAACGGTTCATTCCCTCAATTGCTACATCTTGCTTCCCTATCAGGAATACTAAAATGTATATGCAGGCATTTTAAGCACTCCGCTAGTTCTTTGCCCATTCTTCAACTTCCGGTTGGTTCAATACCCTTGGGTACATGGGTGCCTAAAGTTGGGGAACCGAATGGCCAGCCACTTGCAATGCTTAGGCCAAATGCTTCTCTTGGTGCTGCTCTGTCAATGTTTGTTCAAGCTGAAGTTAGCTCAATACCGATTGTGGATGACAATGATTCATTGATTGACATATATTCAAGAAGTGATATTACTGCATTGGCTAAAGATAAAGCTTATGCTCGTATATCTCTCGATGAAATTAGTATTCATCAGGCATTGCTTTTGGGACAAGATGCAAATTTTCCTTATGGGCTTTACAATGGCCATAGATGTCATATGTGTTTGAGGTCTGATTCATTGCACAAAGTGATGGAGCGGTTGGCTAATCCTGGGGTTAGGAGACTTGTGATTGTGGAGGCTGGCAGCAAGCGCGTGGAAGGGATTATTTCCTTAAGGGACGTGTTCAGATTCTTGTTAGGCTAG 1554 0.4421 MALGRYTACLSVEDGVLYSAVEDSRAVAETCDELVVLVDWDTGYEGTGVSGPGLIPKRFVWPHGGRGVSLIGSFTSWLKHIPMSPMEGCPAVFQVTCSLTPGYHQYKFIVDGEWRHDEQQPFVSGSYGLVNAIYLMREPDVLPSILSAETPGRSHMEVDNDVFGHAGANPRMTEHDLEVSRHRLSVFLSTHTAYDLLPESGKVIALDINLPVKQAFHVLYEQGVSMAPLWDFCRSQFVGVLSAMDFILILKELGNHGSNLTEEQLETHTIAAWKEGKLQQRRTVDSNGGSYPWRFVHAGPHECLKDVALKVLQNKISTVPIIHSSSENGSFPQLLHLASLSGILKCICRHFKHSASSLPILQLPVGSIPLGTWVPKVGEPNGQPLAMLRPNASLGAALSMFVQAEVSSIPIVDDNDSLIDIYSRSDITALAKDKAYARISLDEISIHQALLLGQDANFPYGLYNGHRCHMCLRSDSLHKVMERLANPGVRRLVIVEAGSKRVEGIISLRDVFRFLLG 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi745g00035 517 Gene3D - 364 517 IPR046342 -
Sebi745g00035 517 SMART cbs_1 467 516 IPR000644 -
Sebi745g00035 517 SMART cbs_1 202 251 IPR000644 -
Sebi745g00035 517 SMART cbs_1 384 432 IPR000644 -
Sebi745g00035 517 SUPERFAMILY E set domains 53 134 IPR014756 -
Sebi745g00035 517 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 179 515 - -
Sebi745g00035 517 FunFam Sucrose nonfermenting 4-like protein 53 136 - -
Sebi745g00035 517 Pfam CBS domain 468 516 IPR000644 -
Sebi745g00035 517 Pfam CBS domain 384 428 IPR000644 -
Sebi745g00035 517 Pfam Glycogen recognition site of AMP-activated protein kinase 55 139 IPR032640 -
Sebi745g00035 517 CDD E_set_AMPKbeta_like_N 58 133 - -
Sebi745g00035 517 Gene3D Immunoglobulins 54 135 IPR013783 -
Sebi745g00035 517 ProSiteProfiles CBS domain profile. 380 438 IPR000644 -
Sebi745g00035 517 Gene3D - 173 357 IPR046342 -
Sebi745g00035 517 SUPERFAMILY CBS-domain pair 182 353 IPR046342 -
Sebi745g00035 517 SUPERFAMILY CBS-domain pair 383 516 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi745g00035 Sebi-Chr745 355632 363813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi745g00035 17 145 Protein tyrosine phosphatase (PTP) family AT3G01510 31.298 3.09e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi745g00035 - - gmx:100814655 830.861