Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi745g00030 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTATCAGCAGAGCATACAAGAGAAGATGCAGTTAAACAACAATCCTTGATACTTGGCCACCTCCATACTTCAAATTCTCATTCTTCAACTACAACAAATAACAGCAATGGGTCAAACTCAAATTCACAAACCCCTCCTCCACCTGCTAAGAAGAAAAGAAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCTCTATCGCCAAACACACTTTTAGCGACAAATCGATTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGGGATCAAAACCTTCAATTGCACCGGCGAGGCCATAACCTGCCATGGAAGCTTAAACAGAGAACCAGCACACAAATTCGAAAACGGGTTTATGTTTGTCCAGAACCTTCTTGTGTCCACCATAACCCAACAAGAGCACTGGGTGATCTTACTGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCCGTCCAATCTGACTGGAAAGCCCATTCAAAAATTTGTGGTACAAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGATAGCTTCATCACCCACAGAGCTTTCTGTGATGCACTGGCAGAGGAGAACAACAAAGTGAATGTAGGAGCAAATTGCCAACCAATTATCCCAAACCCATTACCAACAATGAATAATAATAACCATTCCAATGAAAAGCAGCCATTATTACCACTCTCTCATGACCTCATGATGACATTAATGCCTACAACGGCAGCAAAACCATTTAGCAACAACAATTCTCCCTCCCTTCAACTGAGTTCAAACAGAGGCTCACCTCATGATCAATATCACATGTCAGCCACAGCATTGCTTCAAAAAGCTGCACAAATGGGACCAATAGTGAGTAGTGAAAAAAGTTTTGTCACAAGCATGGCAACAATGGCACCACCATCATTCAGTACTAATGAGGCACAACTACAATCATCTGTAATCATGAGCCAGCAGTATGGTAGTCAACTACAGGACATTCCTAATTGTGATCAGTATAATTTCAGTGGCAATAATATTGGAATGAGTGGTTTGGATATGTTCAATGCTATATTGGATCAGAGTAAGGCCTTATCGAAGATCATAGATCAGCAGAATAGAAGCAGTGTTATGTGTCCAACAATTAATGTTAAAGGAAGTGAGGATGTGATGACTTTGGACTTGCTGGGGATAGGAGTAGGAGTAGGAGGACATGGCAATTTGTGTGGTGGAATCCAACAACAGTCAGAAACGGCTGCAAGAGATGATGAGATTTGGAGAAAGTACTGGTCAAACAAGAATAATATTGCAGGCTTTGAATCATTTTCAGCAACAAGTAGCTAG 1404 0.4124 MSNITSCDSGSLSAEHTREDAVKQQSLILGHLHTSNSHSSTTTNNSNGSNSNSQTPPPPAKKKRSLPGNPDPSAEVIALSPNTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTQIRKRVYVCPEPSCVHHNPTRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNVGANCQPIIPNPLPTMNNNNHSNEKQPLLPLSHDLMMTLMPTTAAKPFSNNNSPSLQLSSNRGSPHDQYHMSATALLQKAAQMGPIVSSEKSFVTSMATMAPPSFSTNEAQLQSSVIMSQQYGSQLQDIPNCDQYNFSGNNIGMSGLDMFNAILDQSKALSKIIDQQNRSSVMCPTINVKGSEDVMTLDLLGIGVGVGGHGNLCGGIQQQSETAARDDEIWRKYWSNKNNIAGFESFSATSS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi745g00030 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Sebi745g00030 467 MobiDBLite consensus disorder prediction 1 74 - -
Sebi745g00030 467 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 39 433 IPR031140 -
Sebi745g00030 467 Pfam Zinc-finger double-stranded RNA-binding 90 112 IPR022755 -
Sebi745g00030 467 SMART c2h2final6 131 161 IPR013087 -
Sebi745g00030 467 SMART c2h2final6 166 186 IPR013087 -
Sebi745g00030 467 SMART c2h2final6 90 112 IPR013087 -
Sebi745g00030 467 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Sebi745g00030 467 Gene3D Classic Zinc Finger 144 224 - -
Sebi745g00030 467 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Sebi745g00030 467 Gene3D Classic Zinc Finger 69 135 - -
Sebi745g00030 467 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Sebi745g00030 467 MobiDBLite consensus disorder prediction 28 59 - -
Sebi745g00030 467 MobiDBLite consensus disorder prediction 271 292 - -
Sebi745g00030 467 FunFam protein indeterminate-domain 12-like 69 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi745g00030 Sebi-Chr745 283934 287703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi745g00030 49 223 IDZ Gene Family AT3G50700 81.921 4.61e-110 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi745g00030 zf-C2H2_jaz 6.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi745g00030 - - gmx:100785295 532.332