Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi743g00013 ATGGAGGCAGATTTTGTGATCAGGCTTGGAGACACAGCACATGTGCCCATTGTAACCTTTTCAGCAACAAGCCCTTCTCTTACTTCACTTCAGAGTCCATATTTTTTTCAAATTGCACAAAATGATTTAGCTCAAGTAAAAGTCATAACCACTTTTGTCCAAGCTTTTGGGTGGAAAGAAGTGGTTCTCATTCATGTAGACAATAGTTTTGGGGAAGGAGTCATTCCTAGCTTAACTAATGCTCTACAACAAGCCTATGTTCGAGTTCCCTATCTTAGTGCCATTTCTCTTTCAGCCACAGATGAAGCCATCACAATAGAGCTCTATAAGTTGATGAATATGCCAACCAGAGTCTTTCTTGTGCATATGTCACCAAGTCTTGGCTCTCGCCTCTTCACCATAGCAAGGCAAATTGGAATGATGGGCCAAGGCTATGTTTGGATCGTAACTGATGGAATGGCTAATTTCTTCAACTCTTTAAACTCCTCGGTCATGGAAGCAATGGAAGGAGTATTGGGTGCTAGGCCTTATGTTCCAAGAACAAAAGAGCTTGGTGATTTTAAAGCTCGATGGAAAAGAAAATTCCTACTAGACAATCCAACACTTGTTGATGTAAATTTGAACATTTTTGGAATATGGGCTTATGATGCTACCACATCATTAGCAATGGCTGTTGAGAATGTTGCAATTACCACCAACTTTGGCATTCAAGTGAGAAACACTTCAAGTAACCTGCTTGATCTTGAAAATTTTGGCATTGCACAAAATGGCGAAAAGTTGCGTGAAGCCCTGTCTAACACTAGATTCAGAGGGCTTAGTGGTGATTTTAATATTCTTGGTGGGCAATTACAAGCATCAGCTTTTGAGATAATTCAAGTAAATGGGGGTGGGGAAAGAAGGGTAGGATTTTGGACACCCCAAAAGGGGCTATCTCGAAATCTTGACACAAGAGGCCCAAGTATATATTCTACTTCTAAGAACAATCTTAGTCCCATTATATGGCCAGGGGATACATACTCCATTCCAAAGGGATGGGAAATTCCCACAAATGGAAGGAAATTGAGGATAGGAGTTCCAGTGAAAGATAAAAATAGTTATACTGAATTTGTGAAAATAACACCTGACCCTGTTACAAATTCAACAGTGGTCACCGGATTTTGCATTGATGTCTTCAAAGCTTTGCTAGATGTGTTGCCTTATGCCTTACCATATGAATTTATTCCATTTGCAAAGCCCAATGGTGAGATGGCAGGAAATTATAATGAGTTGGTCAGCCAAGTTTATTATGGGGTGTTTGATGCGGTCGTGGGGGATACAACGATTATTGCAAATAGGTCCAACTATGTTGATTTCACAATGCCGTACACAGAATCTGGTGTGACAATGGTTGTTCTAGTAAAAGACAATCGGAAGAAGAATGCGTGGGCCTTTTTGAAACCTCTTACATGGGATCTTTGGGGGACCTCCCTCGCATCAAATTGGCACAAGCTTATGGTTTTCTTTCTCAATCATGGTGTTTGCCCATATTATACCGCGAGTCTCACTTCCCTCTTAACAGTTGAACAACTACGTCCAACTATTACAGATGTCAATCAACTCATCAAGAATAGGATGAATGTTGGTTATCTAAAAGGTTCTTTTGTTTATGGAATCTTGAAGGACTTAGGTTTCCAAGATTACCAACTCAAGACTTATGAATCCCCAGGAGAATGCAATGAGCTTTTCAGAAAAGGAACTACAAATGGTGGCATTGATGCGGCGTTTGATGAAATTCCTTACGTCAAGCACTTTCTTGGAATATATTGTTCCAAGTATGCCATGGTTGAACCCAGATTTAAAACTGGTGGCTTTGGTTATGTGTTCCCAAAAGGTTCCCCTATGGTAGCTGACATTTCAAGGGCGATCCTTAATGTGACTCAAGGAGACAAAATGAGAGCAATTGAGAATGCATGGTTCAAGGAAAGTAGTTGTGTGGAGTCTAATACAGAAATCTCCTCTAATAGTCTTGGCCTAGAAAGCTTTTGGGGTTTATTTCTTGTTGCAGGAATTGCTTCCCTATTAGCACTCCTAATCTTTGCATTGACTTTCTTATATCAACATAGGGATATTTGGCTACACAATAATCCTGATACTTCAATATGGACACGTATTGGAATCTTGGTAAAGATATTCGATGAAAGAGACTCAAGTTGTCACACATTCAAGAAAAGTGAAATGCAAAATAGAAGTGAAACCACTAGTCCTCATCATAACTTAGGTGTAGTTGAGGCCTCCCCAAGTTCACACTTCCCACCTAGTCCATCTAGTCAAACTGAATCAAACTTTTGCTTTTATGAAGACTTTAGTCCAGACTATGGTGATGTTAAACCATAA 2373 0.3987 MEADFVIRLGDTAHVPIVTFSATSPSLTSLQSPYFFQIAQNDLAQVKVITTFVQAFGWKEVVLIHVDNSFGEGVIPSLTNALQQAYVRVPYLSAISLSATDEAITIELYKLMNMPTRVFLVHMSPSLGSRLFTIARQIGMMGQGYVWIVTDGMANFFNSLNSSVMEAMEGVLGARPYVPRTKELGDFKARWKRKFLLDNPTLVDVNLNIFGIWAYDATTSLAMAVENVAITTNFGIQVRNTSSNLLDLENFGIAQNGEKLREALSNTRFRGLSGDFNILGGQLQASAFEIIQVNGGGERRVGFWTPQKGLSRNLDTRGPSIYSTSKNNLSPIIWPGDTYSIPKGWEIPTNGRKLRIGVPVKDKNSYTEFVKITPDPVTNSTVVTGFCIDVFKALLDVLPYALPYEFIPFAKPNGEMAGNYNELVSQVYYGVFDAVVGDTTIIANRSNYVDFTMPYTESGVTMVVLVKDNRKKNAWAFLKPLTWDLWGTSLASNWHKLMVFFLNHGVCPYYTASLTSLLTVEQLRPTITDVNQLIKNRMNVGYLKGSFVYGILKDLGFQDYQLKTYESPGECNELFRKGTTNGGIDAAFDEIPYVKHFLGIYCSKYAMVEPRFKTGGFGYVFPKGSPMVADISRAILNVTQGDKMRAIENAWFKESSCVESNTEISSNSLGLESFWGLFLVAGIASLLALLIFALTFLYQHRDIWLHNNPDTSIWTRIGILVKIFDERDSSCHTFKKSEMQNRSETTSPHHNLGVVEASPSSHFPPSPSSQTESNFCFYEDFSPDYGDVKP 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi743g00013 790 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 503 IPR015683 -
Sebi743g00013 790 Pfam Bacterial extracellular solute-binding proteins, family 3 380 653 IPR001638 -
Sebi743g00013 790 Gene3D - 529 656 - -
Sebi743g00013 790 Gene3D - 257 352 - -
Sebi743g00013 790 PIRSF IGluLR_plant 499 774 IPR017103 -
Sebi743g00013 790 PIRSF IGluLR_plant 1 508 IPR017103 -
Sebi743g00013 790 MobiDBLite consensus disorder prediction 761 775 - -
Sebi743g00013 790 FunFam Glutamate receptor 41 196 - -
Sebi743g00013 790 Gene3D - 353 479 - -
Sebi743g00013 790 FunFam Glutamate receptor 2.7 560 659 - -
Sebi743g00013 790 CDD GluR_Plant 352 652 - -
Sebi743g00013 790 CDD PBP1_GABAb_receptor_plant 1 314 IPR044440 -
Sebi743g00013 790 SUPERFAMILY Periplasmic binding protein-like II 332 655 - -
Sebi743g00013 790 SUPERFAMILY Periplasmic binding protein-like I 5 336 IPR028082 -
Sebi743g00013 790 SMART GluR_14 355 654 IPR001320 GO:0015276|GO:0016020
Sebi743g00013 790 Pfam Ligand-gated ion channel 654 684 IPR001320 GO:0015276|GO:0016020
Sebi743g00013 790 MobiDBLite consensus disorder prediction 735 775 - -
Sebi743g00013 790 FunFam Glutamate receptor 353 474 - -
Sebi743g00013 790 FunFam Glutamate receptor 253 352 - -
Sebi743g00013 790 Gene3D - 44 204 - -
Sebi743g00013 790 Pfam Receptor family ligand binding region 2 295 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi743g00013 Sebi-Chr743 336855 339671 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi743g00013 1 704 Ion Channels AT2G24720 47.458 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi743g00013 K05387 - qsa:O6P43_019170 983.015