Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi743g00012 ATGGAGGCAGACTTTATGATCCGGCTTGGAGACAAAGCACATGTTCCAATTGTAACCTTTTCAGCAACAAGCCCTGCTCTTGCTTCGCTTCAAAGTCCATATTTTTTCCAAATCGCACAAGATGATTCGGCTCAAGTGAAAGCTATCACAACAATTATCCAAGCTTTTGGGTGGAAAGAAGTGGTTCTCATTTACATAGACGATAGTTTTGGGGAAGGAGTCATTCCTTTCTTAACCAATGCTCTCCAACAAGCCTATGTTCGAGTTCCCTATCTCAGTGTCATTTCTCTTTCAGCCACCAATGAAGTTATCACTGGAGAGCTTTATAAGTTAATGACTATGCCAACTAGAGTCTTTGTAGTGCACATGGTGCCACGCCTTGGCTCTCGCCTCTTCACCCTCGCGAAGCAAATTGGAATGATGGACCAAGGCTATGTTTGGATTGTAACTGATGGCATGACTAATTTGTTCAGCTCCTTAAACACTTCAGTCATGGAATCAATGGAAGGAGTATTGGGTGTGAGGCCTTATGTTCCAAGAACGAAAGAGCTTAATTATTTTAAAGCTCGATGGAAAAGAAAATTCTTACGAGATAATCCAACACTTGTTGACACAAATTTGAATGTTTTTGGAATATGGGCTTATGATACTACTACAGCATTAGCAATGGCAGTTGAGAAAGTTGGAACCACCAACTTTGGCTTCCACGTGAGCAATTCTTCAAGCAACATTCTTGGTTTTGAAAAGTTTGGCATTGCACAAAACGGTGAGAAGTTGCGTGAAGCCCTCTTGAACACTAGATTTAGAGGACTTGGTGGTGATTTCAATATTCTTGGTGGGAAGTTACAAGCATCAACTTATGAGATAATTAATATGGTTGTGGTCACTGGATTTTGCATTGATGTCTTCAAAGCTGTGCTAGATGTGTTGCCATATGCCTTACCATATGAGTTCATTCCATTTGCAAAGCCCGATGGGGATACAACGATTATTGGAAATAGGTCAAATTACGTTGATTTCACAATGCCATACACAGAATCTGGTGTGACAATGGTTGTTTTAGTAAAAGATAATAGGAAGAAAAACGCGTGGGCTTTTTTGAAACCACTAACATGGGATCTTTGGGTAACAACTACTTGTTCATTCATATTCATTGGATTTGTTGTCTGGGTCCTTGAACATCGAGTAAACAACAGCTTTAGGGGGCCTCCCTCACATCAAATTGGCACAAGCTTATGGTTTTCCTTCTCAATCATGGTGTTTTCCCATCGGGAGAAAGTGGTGAGCAACTTGGGTAGATTTGTGGTTATTGTATGGGTGTTTGTGGTTTTAATTTTGGTTCAAAGTTACACTGCGAGCCTCACTTCCCTCTTAACAGTTGAACAACTACGCCCAACTGTTACAGATGTCCATCAACTCATCAAGAATAGGATGAATGTTGGTTATCTAAAAGGTTCTTTTGTTTATGGAATTTTGAAAGACTTAGGTTTCCAAGATTTCCAACTCAAAATTTATGAATCTCCAGAAGAATGTAATGAGCTTTTCAAAAAAGGTAGTACAAATGGTGGCATTGATGCTGCGTTTGATGAAGTTCCTTATGTGAAGCACTTTCTTGGAACTTATTGTTCTAAGTATGTCATGGTTGAACCCAGGTTTCGGCTTTGGTTATGTGTTCCCAAAAGGTTCCCCTCTTGTGGCTGA 1701 0.4009 MEADFMIRLGDKAHVPIVTFSATSPALASLQSPYFFQIAQDDSAQVKAITTIIQAFGWKEVVLIYIDDSFGEGVIPFLTNALQQAYVRVPYLSVISLSATNEVITGELYKLMTMPTRVFVVHMVPRLGSRLFTLAKQIGMMDQGYVWIVTDGMTNLFSSLNTSVMESMEGVLGVRPYVPRTKELNYFKARWKRKFLRDNPTLVDTNLNVFGIWAYDTTTALAMAVEKVGTTNFGFHVSNSSSNILGFEKFGIAQNGEKLREALLNTRFRGLGGDFNILGGKLQASTYEIINMVVVTGFCIDVFKAVLDVLPYALPYEFIPFAKPDGDTTIIGNRSNYVDFTMPYTESGVTMVVLVKDNRKKNAWAFLKPLTWDLWVTTTCSFIFIGFVVWVLEHRVNNSFRGPPSHQIGTSLWFSFSIMVFSHREKVVSNLGRFVVIVWVFVVLILVQSYTASLTSLLTVEQLRPTVTDVHQLIKNRMNVGYLKGSFVYGILKDLGFQDFQLKIYESPEECNELFKKGSTNGGIDAAFDEVPYVKHFLGTYCSKYVMVEPRFRLWLCVPKRFPSCG 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi743g00012 566 Gene3D - 43 207 - -
Sebi743g00012 566 FunFam Glutamate receptor 363 493 - -
Sebi743g00012 566 SMART GluR_14 281 558 IPR001320 GO:0015276|GO:0016020
Sebi743g00012 566 Pfam Ligand-gated ion channel 372 512 IPR001320 GO:0015276|GO:0016020
Sebi743g00012 566 SUPERFAMILY Periplasmic binding protein-like II 295 550 - -
Sebi743g00012 566 CDD PBP1_GABAb_receptor_plant 1 293 IPR044440 -
Sebi743g00012 566 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 552 IPR015683 -
Sebi743g00012 566 Pfam Receptor family ligand binding region 2 293 IPR001828 -
Sebi743g00012 566 Gene3D - 358 492 - -
Sebi743g00012 566 FunFam Glutamate receptor 47 205 - -
Sebi743g00012 566 SUPERFAMILY Periplasmic binding protein-like I 5 294 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi743g00012 Sebi-Chr743 312589 314925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi743g00012 282 554 Ion Channels AT5G27100 49.310 5.02e-83 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi743g00012 K05387 - csav:115707477 583.178