Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi742g00013 ATGGCAAGAAACAAATTCAGTGGCACAATCCCAAAGAGTCTGGGGGATTTAGCATCCCTTGAGACTTTGGATCTATCATCAAACAATCTCTCTGGCCCAATTCCTGAAAGTTTTGAAAAGTATGAGTATATGGTGATGTTAAATTTGTCTTTCAACCATTTGGAAGGGGCGGTTCCTATGAAAGGTGTTTTTCTGAACCTTAGCCGGGTTGATCTCAGAGGTAAAAAGAAGAGAAACATTTTACTCCCTATCATGCTAGCAGTTACAGGTGCAACTGCTTTGTTCATTTCAATGTTCTGTCTACTATGGGTGCTAATGTCCCGAAAGAGGAAATGCAATAAACAGGGGGAAACTAATTTGTCATGTGCTCCTTTTAAGGGGTTACCTCAAAATATATCATATGGAGATATTCGGCTTGCAACAAACAATTTTGCAGCTGAAAACTTGATTGGAAAAGGAGGCTTTGGCTCTGTTTATAAGGGTCTGTTCAGCTTCAGCATCAACACTGGTGAAACCACCACCCTTGCTGTTAAGGTCCTGGACTTAGAGCAAAGCAAAGCTTCTAAGAGTTTTAATGCTGAATGTGAAGCTTTAAGAAATGTCAGGCACCGGAACCTAGTGAAGGTTATCACTTCTTGCTGCAGTGTTGATTATAAGGGAGATGACTTTAAGGCCCTTGTGATGCAATTCATGCCCAATGAGATTAACATTGCTATTGATGTTGCTTCTGCCATGGACTACTTGCATCATGACTGTGACCCACCAATAGTCCATTGTGATCTGAAACCAGTCAATGTCCTGCTAGATGAAGATATGGTTGCACATGTTGCAGATTTTGGATTGGCCAGGTTTCTGTCTCAAAATCAATCAGAGCAACAAAGTAGCACTATGGGACTGAAAGGATCAATAGGCTATATTGCCCCAGAGGCTTCCACTGAAGGTGATGTCTACAGTTTTGGGATTCTACTCCTGGAGATGTTCATAGCCAAGAAACCAACGGATGAAATGTTCAAAGAAGGATTGAGCCTGAACAAATTTATCTCAGTCATGGATGAGAATCAAGTATTGGAGGTTGCAGATCCAAGGCTCATTAAGGAATATGATGAATATTGGAAACAAAGCTTCAGCACTGATTATCATAGCAGCAGGTCTGGGACAAGTGCTATAATGAGGATAACACACATTGGAGGCCCAAAGCTGAGGAGTGCATAG 1212 0.415 MARNKFSGTIPKSLGDLASLETLDLSSNNLSGPIPESFEKYEYMVMLNLSFNHLEGAVPMKGVFLNLSRVDLRGKKKRNILLPIMLAVTGATALFISMFCLLWVLMSRKRKCNKQGETNLSCAPFKGLPQNISYGDIRLATNNFAAENLIGKGGFGSVYKGLFSFSINTGETTTLAVKVLDLEQSKASKSFNAECEALRNVRHRNLVKVITSCCSVDYKGDDFKALVMQFMPNEINIAIDVASAMDYLHHDCDPPIVHCDLKPVNVLLDEDMVAHVADFGLARFLSQNQSEQQSSTMGLKGSIGYIAPEASTEGDVYSFGILLLEMFIAKKPTDEMFKEGLSLNKFISVMDENQVLEVADPRLIKEYDEYWKQSFSTDYHSSRSGTSAIMRITHIGGPKLRSA 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi742g00013 403 Pfam Leucine rich repeat 3 54 IPR001611 GO:0005515
Sebi742g00013 403 Gene3D Ribonuclease Inhibitor 1 78 IPR032675 -
Sebi742g00013 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Sebi742g00013 403 PANTHER OS04G0122200 PROTEIN 1 363 - -
Sebi742g00013 403 FunFam LRR receptor-like serine/threonine-protein kinase EFR 115 230 - -
Sebi742g00013 403 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 219 396 - -
Sebi742g00013 403 ProSiteProfiles Leucine-rich repeat profile. 19 40 IPR001611 GO:0005515
Sebi742g00013 403 Gene3D Phosphorylase Kinase; domain 1 126 230 - -
Sebi742g00013 403 SUPERFAMILY Protein kinase-like (PK-like) 124 343 IPR011009 -
Sebi742g00013 403 SUPERFAMILY L domain-like 2 96 - -
Sebi742g00013 403 ProSitePatterns Protein kinases ATP-binding region signature. 150 178 IPR017441 GO:0005524
Sebi742g00013 403 Gene3D Transferase(Phosphotransferase) domain 1 231 384 - -
Sebi742g00013 403 Pfam Protein kinase domain 146 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi742g00013 403 SMART serkin_6 144 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi742g00013 403 ProSiteProfiles Protein kinase domain profile. 144 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi742g00013 Sebi-Chr742 236328 237781 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi742g00013 1 78 Receptor kinase-like Gene Family AT3G47570 39.241 3.34e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi742g00013 Pkinase 4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi742g00013 - - gmx:100776054 541.191