Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi742g00010 ATGATGATCCACACTAGACTTATTTTGCTCCTATGTTTCCTACTTCATCATTTTCATGGCATCCTATGCAACAATAACACAGATAGAGATGCCCTTCTTTCATTCAGATCCCAACTCACTGACCCAAACAATGCTCTGTCCGGTTGGTTACTGCATTCCAATCACTGCAACTGGTATGGTGTCACCTGCTCCAAACTTGGAAACAGGGTCCAATCTCTCAACTTATCAGGACTTAGCCTCTCTGGTAAACTACCCTATCACCTCTCCAATCTCACTTATCTTCATTCACTTGACCTCTCCAACAATACATTTCATGGCCAAATTCCCCTAGAAATTGGCCATCTCTCACTTCTCAATCTCATTAAATTAGCATTCAACAATCTCAGTGGTACACTTCCACAACAGTTAGGCCATTTGCACCGTCTACAGAGTCTAGACTTTTCTGTCAACAATCTCACAGGTAAAATCCCTCCAACATTTGGCAATCTTTTCTCTCTTAAGTATCTTGCATTGGCAAGGAACAAATTTGTGGGTGAGATTCCAAGTGAATTAGGTAATCTACGCAATCTTTCCCAACTTCAACTCTCAGAGAACAATTTCACTGGCGAGTTTCCCACTTCTATCTTTAACATCTCTTCCTTAGTCTTCTTATCAGTGACTAAGAACAATATATCAGGCAAGTTGCCACAAAATTTGGGCAACACTCTTCCAAATTTAAGCACATTTGCTCTAGCAACCAATAGGTTTGAAGGGGTCATTCCTAGTTCCATATCCAATGCCTCAAACCTTCAAAAAATTGATCTTGCTAACAATAATTTCCATGGCTCCATACCTCTATTCAACAACTTGAAAAATCTTACTCACCTTATTCTTGGTAATAATTATCTCTCTTCCACCACCTCATTGAATTTTAAGTTCTTTAATTCCCTTAGAAACTCCACTCAGTTGCAAATTCTCATGATCAATGATAACCATTTGACTGGGGAACTTCCAAGTTCTGTTGCCAATCTGTCTACCAATCTCCAACAGTTCTGTGTTGCTGATAATTGGTTAAATGGAAGCATTCCCCCAGGGATAGAGAAAATTAAAAATCTCATATCCTTGTCTTTAGAAAACAATGATTTCAGTGGAGAGTTACCATCAGAATTAGGAGCTCTAAATAACCTGCAGCAGCTTGTGATACACAGTAATAGATTGTCTGGGGAAATTCCAGACATTTTTGGCAATTTTACAAATCTGTATATCCTTGCAATGGGAAATAACCAGTTCTCTGGTAGAATCCATAAAAGTATTGGACAATGCGAGAGATTGATTTTTCTTGACCTGAGAAAGAATAGGCTTGGTGGGACCATACCACAGGAGATTTTTCAGCTTTCTAGCTTAACAACCTTGTACTTAACAGGAAACTCTCTGCATGGTTCTCTTCCTCCTGGGATCAACAACATGGAACAGCTTGAAACCATGTTTATTTCAGACAACCAGTTGTCAGGGTACATTCCTAAGGAAATAGATGGTTGTTCTAGCTTGAAGACACTTGTGATGGCAAGAAACAAATTCAGTGGCTCAATTCCAAAGAGTCTAGGGGATTTAGCATCCCTTGAGACTTTGGACCTATCATCAAACAATCTCACTGGCCCAATTCCTCAAAGTTTAGAAAAGCTTCAGTATATGGTGAGATTAAATTTGTCTTTCAATCATTTGGAAGGGCAGGTTCCAATGAAAGGTGTTTTTATGAACCTTAGCCGGGTTGATCTCAGAGGTAACACCAAACTCTGTGGCCTTAACAATGAAATTGTGCAAAAGTTGGGAGTCTCCTTCTGTGATGTTGGTAAGAAAAAGAGAAACATTTTACTTCCTATCATATTAGCAGTTACAGGTGCTACTGCTTTGTTCATTTCAATGCTCTATTTAATGTGGGTGTTGATGTCCCGAAAGAAGAAACGCAAGCAGGGGGAAACTAATTTGTCATATGCTCCTTTTAAGGGGTTACCTCAAAATATATCATATGGTGATATTCGGCTTGCAACAAACAATTTTGCAGCTGAAAACTTGGTTGGAAAAGGAGGGTTTGGCTCTGTTTATAAGGGTCTGTTCAGCTTCAGCATCAACACTGGTGAAACCACCACTCTTGCTGTCAAGGTCCTGGACCTGGAACAAAGCAAAGCTTCTCAAAGTTTCAATGCTGAATGTGAAGCTTTAAGAAATGTCAGGCACAGGAACCTAGTGAAGGTTATCACTTCTTGCTCCAGCGTTGATTATAAAGGAGATGACTTTAAGGCCCTTGTGATGCAATTCATGGCCAATGGTAATTTGGACATGAGTTTATACCCCAATGATGAAGAGTCAGGATCCTCTCTAACCTTGCTGCGAAGATTAAACATTGCCATTGATGTTGCTTCTGCCATGGACTACTTGCATCATGATTGTGACCCACCAATAGTCCATTGTGATCTGAAGCCTGTCAATGTCCTACTAGATGATGATATGGTTGCACATGTTGCAGATTTTGGATTGGCAAGGTTTCTTTCTCAAAATTCATCAGAGCAACAAAGTAGCACTATGGGACTGAAAGGATCAATAGGCTATATTGCCCCAGAATATGGTCTAGGCCTTAAGGCTTCCACTCAAGGTGATGTCTACAGCTTTGGGATCCTACTTCTAGAAATGTTCATAGCCAAAAAACCAACTGATGAAATGTTTAAAGAAGGATTAAGCCTGAACAAATTCATCTCAGCTATGGATGAGAATCAAGTATTGAATATTGCAGATCAAAGGCTTATTAAGGATTATGAATCTTCATCACAAGGCTCCACCACTGATTATCATAATAGTGGGTCAAGCGACAACAGCTATGATAATAGTGAGGCACATTGGAGGCGCAAAGCTGAGGAGTGCATAGCTGCTGTGATAAGAGTAGGCTTGTCTTGTACACCTAATCATCCCAAAGATCGATGGACTATGAGAGAGGCCTTAACGAAATTGCAAGGAATTAGGCAGTCTATGTTGGGCTTGTGA 3015 0.4003 MMIHTRLILLLCFLLHHFHGILCNNNTDRDALLSFRSQLTDPNNALSGWLLHSNHCNWYGVTCSKLGNRVQSLNLSGLSLSGKLPYHLSNLTYLHSLDLSNNTFHGQIPLEIGHLSLLNLIKLAFNNLSGTLPQQLGHLHRLQSLDFSVNNLTGKIPPTFGNLFSLKYLALARNKFVGEIPSELGNLRNLSQLQLSENNFTGEFPTSIFNISSLVFLSVTKNNISGKLPQNLGNTLPNLSTFALATNRFEGVIPSSISNASNLQKIDLANNNFHGSIPLFNNLKNLTHLILGNNYLSSTTSLNFKFFNSLRNSTQLQILMINDNHLTGELPSSVANLSTNLQQFCVADNWLNGSIPPGIEKIKNLISLSLENNDFSGELPSELGALNNLQQLVIHSNRLSGEIPDIFGNFTNLYILAMGNNQFSGRIHKSIGQCERLIFLDLRKNRLGGTIPQEIFQLSSLTTLYLTGNSLHGSLPPGINNMEQLETMFISDNQLSGYIPKEIDGCSSLKTLVMARNKFSGSIPKSLGDLASLETLDLSSNNLTGPIPQSLEKLQYMVRLNLSFNHLEGQVPMKGVFMNLSRVDLRGNTKLCGLNNEIVQKLGVSFCDVGKKKRNILLPIILAVTGATALFISMLYLMWVLMSRKKKRKQGETNLSYAPFKGLPQNISYGDIRLATNNFAAENLVGKGGFGSVYKGLFSFSINTGETTTLAVKVLDLEQSKASQSFNAECEALRNVRHRNLVKVITSCSSVDYKGDDFKALVMQFMANGNLDMSLYPNDEESGSSLTLLRRLNIAIDVASAMDYLHHDCDPPIVHCDLKPVNVLLDDDMVAHVADFGLARFLSQNSSEQQSSTMGLKGSIGYIAPEYGLGLKASTQGDVYSFGILLLEMFIAKKPTDEMFKEGLSLNKFISAMDENQVLNIADQRLIKDYESSSQGSTTDYHNSGSSDNSYDNSEAHWRRKAEECIAAVIRVGLSCTPNHPKDRWTMREALTKLQGIRQSMLGL 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi742g00010 1004 MobiDBLite consensus disorder prediction 932 952 - -
Sebi742g00010 1004 SMART LRR_typ_2 187 211 IPR003591 -
Sebi742g00010 1004 SMART LRR_typ_2 91 115 IPR003591 -
Sebi742g00010 1004 SMART LRR_typ_2 283 309 IPR003591 -
Sebi742g00010 1004 SMART LRR_typ_2 458 482 IPR003591 -
Sebi742g00010 1004 SMART LRR_typ_2 139 162 IPR003591 -
Sebi742g00010 1004 SMART LRR_typ_2 386 409 IPR003591 -
Sebi742g00010 1004 SMART LRR_typ_2 530 554 IPR003591 -
Sebi742g00010 1004 Gene3D Ribonuclease Inhibitor 280 602 IPR032675 -
Sebi742g00010 1004 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Sebi742g00010 1004 Pfam Leucine rich repeat 508 567 IPR001611 GO:0005515
Sebi742g00010 1004 Pfam Protein tyrosine and serine/threonine kinase 682 902 IPR001245 GO:0004672|GO:0006468
Sebi742g00010 1004 PANTHER LEUCINE RICH REPEAT KINASE 2 309 998 - -
Sebi742g00010 1004 SUPERFAMILY L domain-like 26 311 - -
Sebi742g00010 1004 Gene3D Transferase(Phosphotransferase) domain 1 766 1002 - -
Sebi742g00010 1004 MobiDBLite consensus disorder prediction 932 954 - -
Sebi742g00010 1004 ProSitePatterns Protein kinases ATP-binding region signature. 685 713 IPR017441 GO:0005524
Sebi742g00010 1004 ProSiteProfiles Leucine-rich repeat profile. 532 555 IPR001611 GO:0005515
Sebi742g00010 1004 SUPERFAMILY Protein kinase-like (PK-like) 658 994 IPR011009 -
Sebi742g00010 1004 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 766 1003 - -
Sebi742g00010 1004 SMART serkin_6 679 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi742g00010 1004 Gene3D Phosphorylase Kinase; domain 1 661 765 - -
Sebi742g00010 1004 FunFam LRR receptor-like serine/threonine-protein kinase EFR 650 765 - -
Sebi742g00010 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Sebi742g00010 1004 ProSiteProfiles Protein kinase domain profile. 679 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi742g00010 1004 Gene3D Ribonuclease Inhibitor 181 279 IPR032675 -
Sebi742g00010 1004 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 184 - -
Sebi742g00010 1004 FunFam Leucine-rich repeat receptor protein kinase EMS1 204 302 - -
Sebi742g00010 1004 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515
Sebi742g00010 1004 SUPERFAMILY L domain-like 339 595 - -
Sebi742g00010 1004 FunFam LRR receptor-like serine/threonine-protein kinase EFR 303 613 - -
Sebi742g00010 1004 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi742g00010 Sebi-Chr742 188181 191291 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi742g00010 14 999 Receptor kinase-like Gene Family AT3G47570 41.504 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi742g00010 PK_Tyr_Ser-Thr 8.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi742g00010 - - gmx:100776054 1487.63