Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi740g00009 ATGAATGCTATGGTGTTCAAGCATGAGCCTTTATCTTTGTCTCTGTCATCACATAACAACAGTGCACATCATCACCCTCTGGAGCTGAATCTTCAGAGATATGGGTCTGTGATTTATGGTGGTGATAAGGGTGGGTGGGTGATTCCGGGGTTGGTTGGAGGAGTTAGTGGTTCAGGGCCATTTACTGGTTATGCTTCTGTGCTGAAAGATTCGAGATTCTTGAAGCCTGCACAGCAATTGTTGGAAGAGATATGTGATGTTGGGGGTCGTGCTGAGAAGGGGGTGATGGTGGTGGCTGATGCATCCTTCATGGACCCTCCTCCTCCGGAGAGCTTCACTGAAGATCCACTTGCTGCTGGTGATGGTCGCAAGAAGTCAAGGCTTTTGACTATGCTTGATGAGGTTTACAGGAGGTACAGGCAATACTATCAACAAATGCAGGCGGTAGTAACATCATTTGAGTATGTTTCAGGCCTCAGCAATGCAGCTCCTTATGCAAGTTTGGCTATAAAAGCCATGTCCAAACATTTCAGATGCTTAAAAAATGCAATTACTGACCAGCTTCAGTTCACCAATAAGGCTCATTTTCACATAAGCAACAGTAAAGAAGGATCTCCAAGGTTTGGAAACAGTGATAGAGGCCCTTACAGCCAAAGATCAGGGTTTCTTGAGCATCAACCTGTTTGGCGACCTCAAAGGGGACTCCCCGAGCGTGCTGTGACTGTTCTTAGAGCATGGTTGTTTGAGCACTTTCTGCACCCTTATCCCACTGATACAGACAAGCTAATGTTGGCTAAACAAACAGGTCTGTCTCGAAGTCAGGTGTCTAATTGGTTCATCAATGCAAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACATATGCTTGAAACGCGACAAGCTCAAAAGATTTCACAGAAGGAAGAACATTGTAGGAACAAACCAAGTGAGAATTTGCCTTCAGACAACTCTCTTGTTTCTGAGAATCCATCTACCTCCACAGATAAATATCAGGATGCTCCTTACAAGCGCACTATAAATGAAATTCCTAATATAGCAGTTAGGAGTCAAGAACAACTGAATCTGCCCTGCACAGGCAACCAGCCAGTAGGTGTTGGAGTGAACATTGGGAGTGGAAGCAATAATAGTGTGTCACTGACACTAGGTCTTCATCAAAATCATGGGATTGGTTTAGCTGAACCTTTTCCTTTGAGTGCAGCTCAGCGTTTTGGTCTAGGTCTTGAAACCAATAATGAAGGCTATGTTATGAGTGGTTTTGAATCACAAAATAGGCATTTTGGAAGAGAGGTTATTGGAGGCCAAATATTGCATGACTTTGTAGGCTGA 1350 0.4415 MNAMVFKHEPLSLSLSSHNNSAHHHPLELNLQRYGSVIYGGDKGGWVIPGLVGGVSGSGPFTGYASVLKDSRFLKPAQQLLEEICDVGGRAEKGVMVVADASFMDPPPPESFTEDPLAAGDGRKKSRLLTMLDEVYRRYRQYYQQMQAVVTSFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITDQLQFTNKAHFHISNSKEGSPRFGNSDRGPYSQRSGFLEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKISQKEEHCRNKPSENLPSDNSLVSENPSTSTDKYQDAPYKRTINEIPNIAVRSQEQLNLPCTGNQPVGVGVNIGSGSNNSVSLTLGLHQNHGIGLAEPFPLSAAQRFGLGLETNNEGYVMSGFESQNRHFGREVIGGQILHDFVG 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi740g00009 449 SMART HOX_1 229 293 IPR001356 GO:0003677
Sebi740g00009 449 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 16 317 - -
Sebi740g00009 449 SUPERFAMILY Homeodomain-like 231 296 IPR009057 -
Sebi740g00009 449 SMART prehox3 62 186 IPR006563 -
Sebi740g00009 449 Pfam Associated with HOX 67 185 IPR006563 -
Sebi740g00009 449 MobiDBLite consensus disorder prediction 304 339 - -
Sebi740g00009 449 ProSiteProfiles 'Homeobox' domain profile. 226 289 IPR001356 GO:0003677
Sebi740g00009 449 Pfam Homeobox KN domain 246 285 IPR008422 GO:0003677|GO:0006355
Sebi740g00009 449 Gene3D - 232 294 - -
Sebi740g00009 449 FunFam BEL1-like homeodomain protein 9 232 294 - -
Sebi740g00009 449 CDD homeodomain 229 290 IPR001356 GO:0003677
Sebi740g00009 449 MobiDBLite consensus disorder prediction 318 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi740g00009 Sebi-Chr740 137944 143787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi740g00009 2 449 Homeobox Transcription Factor Family AT5G02030 49.160 2.09e-118 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Sebi740g00009 POX 2.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi740g00009 - - gmx:100805512 696.812