Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi73g00114 ATGAACAATAGAGCGAGATACCCACCTGGGATCGGGTTAGGGCGAGGTGGTGGTGGTTTGAACTCGAACCCTGGGACCCAGTTGGGTGGTACTGACACCAACGTTGTTGAGGAAGTTGAGAAGACTGTACAGTCTGAAGCCGTTGACCCTAGTTCACAAGATTGGAAGGCAAGACTAAATATTCCACCTCCTGATACACGCTATAGGACAGAGGATGTAACAGCAACTAAAGGAAACGAATTTGAGGATTACTTTCTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCATCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGCAAAACAGCTGCATTTTGTATTCCCGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTTATACTGGTCCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTAAAAATTCAAGTCATGGTTACAACAGGTGGTACAAGCCTGAAAGATGATATTATGCGATTATATCAACCAGTTCATTTGCTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCATTCTGAGAAATTGTTCTATGCTTGTTATGGATGAGGATAAGGTATCTGTATCTTGTGTTGTCAAGTTGATAGTGGAAGCAACAGCTCTGTGTATTGCATCTTTGATTTATGTTGTGAATATTGAGCAGGACATCTTTTCCTTTGTGTCGTTTTCACATGTTCATTCTGCTGATAAGCTTCTCTCCCCTGAGTTCCAACCTTCAGTAGAGCAGCTAATTCAATTTCTTCCTGCAAACCGTCAGATCCTGATGTTTTCAGCTACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTTCGTAAGTCGTATGTTATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATATTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTGAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCCATCATCTTCTGCAATTCGGTGAATCGGGTTGAACTCCTTGCTAAGAAAATCACAGAACTTGGATATTCGTGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGAAATAGAGTTTTTCATGACTTTCGCAATGGTGCCTGCAGGAATCTGGTTTGCACTGATCTTTTCACTAGGGGAATAGATATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACTTATCTACACAGGGTTGGTCGTTCAGGAAGATTTGGGCACCTTGGTTTGGCAGTGAATTTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAGCAAGAACTTGGCACTGAAATAAAACAAATCCCGCCACACATTGATCAGGCAATATATTGTAGCTTGATGTGA 1500 0.402 MNNRARYPPGIGLGRGGGGLNSNPGTQLGGTDTNVVEEVEKTVQSEAVDPSSQDWKARLNIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILRNCSMLVMDEDKVSVSCVVKLIVEATALCIASLIYVVNIEQDIFSFVSFSHVHSADKLLSPEFQPSVEQLIQFLPANRQILMFSATFPVTVKDFKDRYLRKSYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCSLM 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi73g00114 499 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
Sebi73g00114 499 FunFam ATP-dependent RNA helicase DDX6 328 498 - -
Sebi73g00114 499 CDD SF2_C_DEAD 335 464 - -
Sebi73g00114 499 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 324 IPR014001 -
Sebi73g00114 499 Gene3D - 38 327 IPR027417 -
Sebi73g00114 499 Pfam Helicase conserved C-terminal domain 349 455 IPR001650 -
Sebi73g00114 499 Pfam DEAD/DEAH box helicase 104 229 IPR011545 GO:0003676|GO:0005524
Sebi73g00114 499 SMART helicmild6 374 455 IPR001650 -
Sebi73g00114 499 MobiDBLite consensus disorder prediction 1 31 - -
Sebi73g00114 499 SMART ultradead3 98 338 IPR014001 -
Sebi73g00114 499 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 41 496 - -
Sebi73g00114 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 477 IPR027417 -
Sebi73g00114 499 MobiDBLite consensus disorder prediction 45 67 - -
Sebi73g00114 499 CDD DEADc_DDX6 81 325 - -
Sebi73g00114 499 Gene3D - 328 498 IPR027417 -
Sebi73g00114 499 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 494 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi73g00114 Sebi-Chr73 2251679 2256536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi73g00114 81 490 Eukaryotic Initiation Factors Gene Family AT3G19760 33.981 2.26e-85 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi73g00114 K12614 - qsa:O6P43_027218 814.298