LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi73g00112	ATGGCTTGTAGTTTGTCACAGTCAAAAATGTTACACGGAGGTGTGGAGACAAGTTTCAGACACGGATCAGTTGGTCAAGTAGGTCGTTTTGATTTTAGAGGAAGAGGTTTTGGTTATGCATTTCTTGCCAACTCAAGAAATACTCTGAGATTGCGTTTTAGTGGGATGAACAGAGTTAGTGGTATTTCTGCTTGTTGGAATAATTCAAGAGTGGTTTCTGGTGCTTATGTTAATGGCAATGGCCGCAATGTTGATTATGTGGAAGGTTCAGGTGAGGATGTAGGGCTTGGATCCGTTTCTAGTGCTGAACTGGATGCATCGTTGGAAGAAAAGAAAGGGCAAGCTGAGACAGAAGGAGGGAGTGAAATAGGAGTAGAGGAACAAAGTGTGGATGAACTGAAAGAACTATTACAAAAGGCCTTGAAGGAACTAGAAGTTGCACAAATAAATAGTACTATGTTTGAGGAAAAGGTTAAAAAAATATCAGAGACTGCCATTTTTTTGCATGATGAAGCAGCACGTTCTTGGAATGATGTTAATTCTGCTCTTGACACCATTCAAGAAATTTCAAATGAAGAAGTTATGGTCAAAGAAGCTGTCCAAAATGCAACTATGGCTCTTTCATTAGCCGAGGCAAGGCTTCAAGTAGCCATAGAATCTTTGGAGGTTGCAAAAGAAGTGCCTGATTCAGAGCAAGGTTCTAATGAGGACAATGGTGATAAAGGCATAACGGAAGCAGAGAAAGCACTTTTCATTGCTCAAGAAGATATTAAGGAATGTCAGGCAAATTTAGCCAATTGTGAGGCTGAGCTGAGGCGCTTGCAAAATAGAAAGGAGGACTTGCAGAAGGAAGTGAACAAATTGCAAGAAGTTGCTGAAAAGGCACAGCTGAATGCAGTGAAAGCTGAGGAGGATGTTACAAACATAATGCTTTTAGCGGAGCAAGCTGTTGCCTTTGAACTTGAGGCTACACAACGTGTAAATGATGCTGAGATTGCCTTACAGAGAGCAGATAAGTCTGTTTCTAATTTGAATGCTGATACCGCAGAAACTATTACAATTCAAGATGCTGAGCCTGTTCCTGAGGAGAAAGTGGCTCAAGGTCTTTCTGGTGATGTCACTGTTGAAAGAGACAGAGATGTGGCAAATGATGACGAATCTTTGCTTGCCAAATTATCACCTGAAACACTATCTGATAAAACCAGCCAAGTCTCAGAAGACATTACACAGTCTGAATATTTGAGTGATAATGAGAATGCTGTACAAACAAAAAAGCAGGAAACACAGAAAGATTTGACTAGAGATAGTTCACCCTTTGCTCCCAAGGCATTACTAAAGAAGTCTTCTCGATTCTTTTCTGCATCGTTCTTTTCTTTTACTGAAGATGAAGCTGAGTCCACACCAGCATCAGTTTTCCAAGGCCTCGTGTTATCTGCAAAGAAGCAGTTGCCCAAGCTTGTTATTGGGTTGTTGTTAATGGGAGCAGGGGTTGCGTTCTATACCAATAGGGTAGAGAGGAATTCTCAGCTGCTTCAACAGGCAGATGTTATTGTGACTAGTGTTGAAGAAGTTTCCTCTAGTGCAAAGCCTCTGGTTAGACGACTTCAGAAACTCCCCAAGAAAATTAAGAAAATCATTGCATCATTACCTCATCAAGAGGTGAATGAGGAAGAAGCCTCCCTCTTTGACATGCTCTGGTTATTACTTGCAAGTGTTATATTTGTTCCAATATTTCAAAAAATCCCTGGAGGCAGTCCGGTTCTTGGCTACTTGGCTGCTGGTATCTTGATTGGGCCTTATGGTCTCTCCATTATTCGTCATGTTCATGGGACAAAAGCAATAGCTGAATTTGGAGTTGTTTTCCTTTTATTCAATATTGGCCTGGAGCTCTCTGTTGAAAGGCTTAGTTCAATGAAGAAATATGTTTTTGGATTAGGCTCTGCACAGGTTTTAGCAACTGCTGTAGTTGTTGGCTTGGTGGCTCATTATATTTGTGGCCAACCTGGCCCTGCTGCTATTGTCATTGGGAATGGCCTGGCATTATCATCTACTGCTGTTGTTCTGCAGGTGTTGCAGGAGAGAGGTGAGAGCACATCACGGCATGGACGAGCTACATTTTCTGTTTTACTTTTTCAGAGATCCTCTACAAGCATCCTCTACTTTGTTGCTCTATCTGGTCAATTGTTGTGTGAATTTGCCATTTCTGATGATTTGGCTGTTGTCGTCTTATTAATCCTCATACCCCTAATTTCACCTAGTTCTTCCAAAGGAGGGGTTGGTTTTCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTTAAGGCAGCAGTTGCCATCACTGCCATAATTGCAGGTGGACGATTGGTAAGTGGTATTCAAACTGAGATGAAGGCATCGGATGGTGGTACACTGCTCCTTCGACCAATATACAAGCAGGTTGCAGAAAATCAAAATGCAGAAATATTCTCAGCCAATACACTCCTTGTTATTCTTGGGACTAGTCTTCTTACAGCCAGGGCAGGACTTTCCATGGCATTGGGAGCATTTTTGGCTGGTTTACTACTTGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGGCTATTCTTTATGACGGTAGGAATGTCAATCGATCCAAAACTTTTTGTTTCAAACTTCCCAGTCATTGCAGGGACATTGGGACTCTTAATATGCGGCAAGACTATCTTGGTTTCTTTGATGGGTAGAATCTTTGGGATTTCCCTTATTCCTGCCATTAGAGTTGGTCTTCTTCTTGCTCCTGGTGGAGAATTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTAGCCAGCTCTCATCTTTGCTGTTTCTTGTTGTGGGGATTTCAATGGCTATCACACCATGGCTAGCTGCAGGAGGCCAGCTGATTGCTTCCCGTTTTGAGCAGCATGATGTTAGAAGTTTATTACCTGTAGAAAGTGAGACTGATGATCTGCAAGATCATATCATTATTTGTGGATTTGGACGAGTAGGCCAGATCATTGCGCAACTTCTTTCTGAGCGACTTATTCCGTTTGTTGCACTGGATGTGAGAGGTGATAGAGTGGCAATTGGGCGAGCCCTGGATCTCCCTGTGTACTTTGGAGATGCTGGTAGTCGAGAGGTCTTACATAAGGTTGGGGCTGAAAGGGCATGTGCTGCAGCAATAACTTTAGATACACCTGGATCAAATTATAGAACAGTTTGGGCTCTGAGCAAGTACTTCCCAAATGTGAAGACTTTTGTTCGTGCCCATGACGTTGATCATGGATTGAATTTGGAAAAGGCTGGAGCTACTGCTGTTGTCCCAGAGACCTTGGAACCAAGTCTTCAACTAGCAGCTGCTGTGCTTGCTCAGGCTAAACTCCCCACATCAGAGATTGCAGCAACTATAAATGAATTCAGATGCCGTCATCTTGCTGAGCTCACAGAGCTGTGTGAAGCAAGTGGAAGTTCTCTTGGTTATGGATATACTAGAATTATGAGCAAACCCAAGTCTCAATCCCCAGATTCATTGGACGAGACCCAAGTCTCTGAAGGGAAACTGGCAATATGA	3618	0.4265	MACSLSQSKMLHGGVETSFRHGSVGQVGRFDFRGRGFGYAFLANSRNTLRLRFSGMNRVSGISACWNNSRVVSGAYVNGNGRNVDYVEGSGEDVGLGSVSSAELDASLEEKKGQAETEGGSEIGVEEQSVDELKELLQKALKELEVAQINSTMFEEKVKKISETAIFLHDEAARSWNDVNSALDTIQEISNEEVMVKEAVQNATMALSLAEARLQVAIESLEVAKEVPDSEQGSNEDNGDKGITEAEKALFIAQEDIKECQANLANCEAELRRLQNRKEDLQKEVNKLQEVAEKAQLNAVKAEEDVTNIMLLAEQAVAFELEATQRVNDAEIALQRADKSVSNLNADTAETITIQDAEPVPEEKVAQGLSGDVTVERDRDVANDDESLLAKLSPETLSDKTSQVSEDITQSEYLSDNENAVQTKKQETQKDLTRDSSPFAPKALLKKSSRFFSASFFSFTEDEAESTPASVFQGLVLSAKKQLPKLVIGLLLMGAGVAFYTNRVERNSQLLQQADVIVTSVEEVSSSAKPLVRRLQKLPKKIKKIIASLPHQEVNEEEASLFDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLATAVVVGLVAHYICGQPGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQRSSTSILYFVALSGQLLCEFAISDDLAVVVLLILIPLISPSSSKGGVGFQAIAEALGLAAVKAAVAITAIIAGGRLVSGIQTEMKASDGGTLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLFVSNFPVIAGTLGLLICGKTILVSLMGRIFGISLIPAIRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMAITPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRGDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGSNYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATINEFRCRHLAELTELCEASGSSLGYGYTRIMSKPKSQSPDSLDETQVSEGKLAI	1205

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi73g00112	1205	MobiDBLite	consensus disorder prediction	394	422	-	-
	Sebi73g00112	1205	MobiDBLite	consensus disorder prediction	1184	1205	-	-
	Sebi73g00112	1205	Pfam	TrkA-N domain	1010	1123	IPR003148	GO:0006813
	Sebi73g00112	1205	Coils	Coil	243	305	-	-
	Sebi73g00112	1205	Pfam	Sodium/hydrogen exchanger family	567	977	IPR006153	GO:0006812\|GO:0015297\|GO:0016020\|GO:0055085\|GO:1902600
	Sebi73g00112	1205	Coils	Coil	327	347	-	-
	Sebi73g00112	1205	Gene3D	-	725	982	IPR038770	-
	Sebi73g00112	1205	Gene3D	-	557	724	IPR038770	-
	Sebi73g00112	1205	MobiDBLite	consensus disorder prediction	356	436	-	-
	Sebi73g00112	1205	FunFam	K(+) efflux antiporter 2 chloroplastic	1005	1169	-	-
	Sebi73g00112	1205	Coils	Coil	123	150	-	-
	Sebi73g00112	1205	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	1006	1147	IPR036291	-
	Sebi73g00112	1205	ProSiteProfiles	RCK N-terminal domain profile.	1009	1131	IPR003148	GO:0006813
	Sebi73g00112	1205	Gene3D	-	1005	1169	-	-
	Sebi73g00112	1205	PANTHER	K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC	736	1195	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi73g00112	Sebi-Chr73	2145815	2162408	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi73g00112	31	1205	Inorganic Solute Cotransporters	AT4G00630	67.821	0.0	1403

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi73g00112	K03455		-	gmx:100818163	1761.5