Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi73g00023 ATGAGTTTCTTGCAGGGAATCATTGATTCTTTCAATTCGATCTTCTCTCCAGACGATCATTCTAATTCTGCTTCTCAATCCAATCTCACTGCTTCTTCACCAATGGAAGCTTCTCCTTCTTCTTCGGTTTCCAACGAACGCGTCGCTTACAAGCTCAAAGGGTACTTCGATTTGGCCACACAAGAGATCGACAAGGCCGTTAGGGCCGAAGAGTGGGGCTTGATCGATGATGCTCTTCTTCACTACAGGAACGCCCAGAAGATTCTCCTCGAAGCAAATTCTACTCCTGTTCCTTCCTTCATCACTCCCAGGCAAAAACTTGAATTCTTGTCAATTGGATTTTCAGGGAGAATAGGGAGTGTTGCGATTTTGGAATTGCACTTTAACTTTTATTTTAATCTCAAAGGGTTGTCCTTAGCTTGGTACCAGCTTGGATGTAGTTCATCTGAGAATCAGAGCACCTCAAACCTTGCACGAAGTGCTACTGTTCCAATTAAACCATCAAATAGTCCAAAAAATGTGATACAAAAGTATCCTCAAAGAACAGGTCAGGTGAACAAAGTTGGAAGCCCGAAATCTAATCAAGCATCTGGTGCAAATTATGACACAAAGCTGGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGATGATGTTGCTGGCCTTGAGAAGGCAAAGCAAGCTTTGATGGAGATGGTTATTTTGCCAGCTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTCTCTTTGGTCCGCCTGGTAATGGAAAGACCATGCTTGCCAAAGCAGTGGCTTCAGAATCAGAAGCAACATTTTTTAATGTCTCGGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCCAGACAACCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAATGAGAACGATGCTAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTGTGATTGGTGCGACCAATAAGCCACAAGAATTGGATGATGCAGTTCTTAGGAGACTGGTAAAAAGAATATACATACCTTTACCAGATGAAAATGTTCGGAAACTTCTGCTAAAAAACAAACTCAAGGGTCAAGCATTCTCCTTACCTAATAGAGATCTAGAAATGCTTGTAAAAGAGACAGAAGGATATTCTGGAAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTTCTAACATTCTCACTGTTAAGGCAAATCAGGCATGCTAG 1377 0.4183 MSFLQGIIDSFNSIFSPDDHSNSASQSNLTASSPMEASPSSSVSNERVAYKLKGYFDLATQEIDKAVRAEEWGLIDDALLHYRNAQKILLEANSTPVPSFITPRQKLEFLSIGFSGRIGSVAILELHFNFYFNLKGLSLAWYQLGCSSSENQSTSNLARSATVPIKPSNSPKNVIQKYPQRTGQVNKVGSPKSNQASGANYDTKLVEMINTAIVDRSPSVRWDDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYIPLPDENVRKLLLKNKLKGQAFSLPNRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGSNILTVKANQAC 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi73g00023 458 ProSitePatterns AAA-protein family signature. 361 380 IPR003960 GO:0005524|GO:0016887
Sebi73g00023 458 FunFam Spastin, putative 218 403 - -
Sebi73g00023 458 CDD RecA-like_spastin 224 387 - -
Sebi73g00023 458 MobiDBLite consensus disorder prediction 22 41 - -
Sebi73g00023 458 FunFam Fidgetin like 1 390 457 - -
Sebi73g00023 458 Pfam AAA+ lid domain 414 445 IPR041569 -
Sebi73g00023 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 448 IPR027417 -
Sebi73g00023 458 PANTHER AAA DOMAIN-CONTAINING 67 456 - -
Sebi73g00023 458 Gene3D - 390 456 - -
Sebi73g00023 458 SMART AAA_5 255 391 IPR003593 GO:0016887
Sebi73g00023 458 FunFam AAA-type ATPase family protein 45 111 - -
Sebi73g00023 458 Gene3D - 218 389 IPR027417 -
Sebi73g00023 458 SMART smart 52 120 IPR007330 -
Sebi73g00023 458 Pfam ATPase family associated with various cellular activities (AAA) 259 389 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi73g00023 Sebi-Chr73 361182 367408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi73g00023 200 444 Calmodulin-binding Proteins AT3G56690 41.036 9.29e-48 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi73g00023 K13254 - gmx:100780946 665.225