Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi737g00011 ATGGAAATCCTCCCTCCTGCACCATATATTCACAACTCCAACAGCACCAATTGGTTTCTTGAAGATAACAGGAACACCAAATGGACTCCTGCAGAGAACAAGCTGTTTGAAAATGCTCTTGCAGTGTATGATAAGGACACCCCGGATCGGTGGCACAAAGTAGCTGAAATGATACCAGGAAAGACAGTTGTGGATGTGATGAAGCAGTACAAGGAGTTAGAAGCAGATGTTTGTAACATAGAAGCTGGTTTGATCCCAATTCCTGGCTACAGTACCACCACCTCACCCTTCACCTTAGATTGGGTCAACACTCCTGGGTATGATGGTTTTAAAGGACTCACTGCAAAGAGATCCTCCTCAGGCAGAACCCCTGATCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAACACAAATTATTTCTACTGGGTCTGAAAAAGTATGGCAAAGGTGATTGGAGGAATATATCACGTAATTTTGTGATTACTAGAACCCCAACTCAGGTGGCTAGCCATGCTCAAAAGTACTTCATAAGGCAACTTTCAGGAGGCAAAGACAAGAGAAGAGCTAGCATTCATGACATAACAACTGTTAATCTCACAGAACCAACCAGAACTTCTCTTTCAGAAGACAACAAGAGATCCACTTCACCACAACATTCCTTGATGCTCTCTCACCAGCTTCCAGATTCTACTGCTACCACATCTGGGTTGCATTTTCAGTGGAATAATAATAATCAGCCAAATGCAGTAGCAACAACTATGGCTCCTAATCTTGCAAATGAACAAGTATTCATGACTCCTTATGGGGTTAACTCCTTTGGTTTTAAAATGCAGGGCCAAAATCTTCACAGAAGTCCTCTTCATGGGTCTTCTTACTTAGGACCTCAGACACAAAACATGGTTTTCCAAATGCAATCCTCTCAACACTATTCCCATGCATGA 948 0.4283 MEILPPAPYIHNSNSTNWFLEDNRNTKWTPAENKLFENALAVYDKDTPDRWHKVAEMIPGKTVVDVMKQYKELEADVCNIEAGLIPIPGYSTTTSPFTLDWVNTPGYDGFKGLTAKRSSSGRTPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTEPTRTSLSEDNKRSTSPQHSLMLSHQLPDSTATTSGLHFQWNNNNQPNAVATTMAPNLANEQVFMTPYGVNSFGFKMQGQNLHRSPLHGSSYLGPQTQNMVFQMQSSQHYSHA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi737g00011 315 CDD SANT 133 178 IPR001005 -
Sebi737g00011 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 182 IPR017930 -
Sebi737g00011 315 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 257 IPR043363 -
Sebi737g00011 315 Gene3D - 21 87 - -
Sebi737g00011 315 FunFam transcription factor MYB1R1 132 183 - -
Sebi737g00011 315 MobiDBLite consensus disorder prediction 202 223 - -
Sebi737g00011 315 NCBIfam myb-like DNA-binding domain, SHAQKYF class 129 181 IPR006447 GO:0003677
Sebi737g00011 315 SUPERFAMILY Homeodomain-like 26 81 IPR009057 -
Sebi737g00011 315 ProSiteProfiles Myb-like domain profile. 20 74 IPR001005 -
Sebi737g00011 315 Gene3D - 132 182 - -
Sebi737g00011 315 SMART sant 24 76 IPR001005 -
Sebi737g00011 315 SMART sant 130 180 IPR001005 -
Sebi737g00011 315 ProSiteProfiles SANT domain profile. 134 182 IPR017884 -
Sebi737g00011 315 FunFam Transcription factor SRM1 20 87 - -
Sebi737g00011 315 Pfam Myb-like DNA-binding domain 133 178 IPR001005 -
Sebi737g00011 315 Pfam Myb-like DNA-binding domain 27 71 IPR001005 -
Sebi737g00011 315 SUPERFAMILY Homeodomain-like 128 181 IPR009057 -
Sebi737g00011 315 CDD SANT 27 73 IPR001005 -
Sebi737g00011 315 ProSiteProfiles Myb-like domain profile. 126 178 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi737g00011 Sebi-Chr737 389962 391262 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi737g00011 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi737g00011 - - gmx:100784163 501.901