Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi736g00022 ATGGATAAAATTAAGCATGAAGGTTCAGATCACGACGGAGAAGGAGAAGCCTATGCAGAAGAGGCTGGGAAGAAGATAAAGATATCTCCTTTGAGGTCTTGTGAAGTTGAAGCTGATGAGGCGGTTTCTGTTGAGAACACAGCTCCAAAAACACGTGAGTGCAATATCTGCGGCAAGACTTTCAGCAATGGAAAAGCATTGGGTGGTCACAGAAGATTCCACTTTCAGGAAGCCAGAAAGTATCCACATAAGGTGAAAACCCTATTATTAAAAAAAGTTATTAACAATAGGGCTAGTTCTGATGGGAAACACAAATGTTCAATTTGCAACAAGGAATTCACATCCAAGAACGCCTTGTTTGGTCACATGAGGTCCCACCCTAAGGACAAGAAGGGTCTGTGCCCTCCTAGTTCTTCCTCCCACAATTCTGATTCTTCTGTGGAACAGAATGATAAAGAGGATCAAGATCATGGTAAGGTAGTTGCACCAGATGAACATAGATTCATTGATCTTTCAAAATCTAATCCACCAAGCTGGCAAAAGAAAGATAAAAGAGGAAGAAAATGTATTGGTGGTTATGAAGCTGCTAAAAATCTTATGTACATTTATGCTGAGTTATATTCTTGTCATGATGTTTCCAAGAAGAGGACTAGTACTGCTGTTGAGCCAAAGAGTCCTCAAGTTTCAATCCCAGCTAAGAAAAGGAAGATTATTGGTGAATCATCCTCTAGTGAAGTGAAGAAGATCAAATTCGTTTTTGGTGGTTCATTCAAGTTTGGGGAAAATTCTGAGAGGGATGGTGACTGTGATGATAGTGACAAGCTGAATAGTAAAAAGCATGATGTGAATGAGAGTCCTGGGAAAATTAAGATTGAAGCAGCCAATCCTGGTGCTGAGGTGAAGAAGGTGCGGAAAGGGAAGAAGAGTAAGAAGGACTCAGTGTATGAAAATGAAACTCAAGAGAAATCAGGTGCGTATAAATGTGGTATTTGTAGTAAATCTTTTTCTACTTTCCAAGGCTTAGGGGGACACAGATCAGTTCACAAACAGAAGAACATTGAAACCATGAATGAAGAGAATCAGCCCAACATTGCTGCAGTGGCTGAAGAAATCAATTCTTCTGGTTCTAGCAATGTGCCTAAAGTGGATGAGACTGAGACACCACTGAGTGAAGAAACACTGACACTGACAGATGAGGCTAGTCAGTCTACAGGTCCAACAAAATTGGATTTTGATCTGAATGAGCCATATGTTATGGAGGAGAACTAA 1269 0.4043 MDKIKHEGSDHDGEGEAYAEEAGKKIKISPLRSCEVEADEAVSVENTAPKTRECNICGKTFSNGKALGGHRRFHFQEARKYPHKVKTLLLKKVINNRASSDGKHKCSICNKEFTSKNALFGHMRSHPKDKKGLCPPSSSSHNSDSSVEQNDKEDQDHGKVVAPDEHRFIDLSKSNPPSWQKKDKRGRKCIGGYEAAKNLMYIYAELYSCHDVSKKRTSTAVEPKSPQVSIPAKKRKIIGESSSSEVKKIKFVFGGSFKFGENSERDGDCDDSDKLNSKKHDVNESPGKIKIEAANPGAEVKKVRKGKKSKKDSVYENETQEKSGAYKCGICSKSFSTFQGLGGHRSVHKQKNIETMNEENQPNIAAVAEEINSSGSSNVPKVDETETPLSEETLTLTDEASQSTGPTKLDFDLNEPYVMEEN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi736g00022 422 SMART c2h2final6 52 74 IPR013087 -
Sebi736g00022 422 SMART c2h2final6 104 126 IPR013087 -
Sebi736g00022 422 SMART c2h2final6 326 348 IPR013087 -
Sebi736g00022 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Sebi736g00022 422 SUPERFAMILY beta-beta-alpha zinc fingers 324 352 IPR036236 -
Sebi736g00022 422 MobiDBLite consensus disorder prediction 371 422 - -
Sebi736g00022 422 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Sebi736g00022 422 Gene3D Classic Zinc Finger 46 132 - -
Sebi736g00022 422 MobiDBLite consensus disorder prediction 1 22 - -
Sebi736g00022 422 Gene3D Classic Zinc Finger 303 383 - -
Sebi736g00022 422 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 94 421 IPR044653 GO:0003700
Sebi736g00022 422 MobiDBLite consensus disorder prediction 371 409 - -
Sebi736g00022 422 SUPERFAMILY beta-beta-alpha zinc fingers 49 78 IPR036236 -
Sebi736g00022 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Sebi736g00022 422 SUPERFAMILY beta-beta-alpha zinc fingers 102 134 IPR036236 -
Sebi736g00022 422 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Sebi736g00022 422 MobiDBLite consensus disorder prediction 263 286 - -
Sebi736g00022 422 ProSitePatterns Zinc finger C2H2 type domain signature. 328 348 IPR013087 -
Sebi736g00022 422 Pfam C2H2-type zinc finger 325 350 - -
Sebi736g00022 422 Pfam C2H2-type zinc finger 104 128 - -
Sebi736g00022 422 Pfam C2H2-type zinc finger 52 74 - -
Sebi736g00022 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 326 353 IPR013087 -
Sebi736g00022 422 MobiDBLite consensus disorder prediction 120 186 - -
Sebi736g00022 422 MobiDBLite consensus disorder prediction 298 319 - -
Sebi736g00022 422 MobiDBLite consensus disorder prediction 146 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi736g00022 Sebi-Chr736 377743 379011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi736g00022 54 139 C2H2 Transcription Factor Family AT2G26940 37.143 2.15e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi736g00022 zf-C2H2_6 7.2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi736g00022 - - aprc:113854137 302.367