Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi735g00014 ATGCCTGGGACAAGACAGAATCCAGAGTCACCAGAGGGGAAACCCACAGATTCTGATGAGCAGCCCTCAGACGGTGAGGATGAGATGCGAGTAGCAGATACTAAGGATGAGGTTGAGAAAAAGAAACACGCTGATCTTCTTGCGCTTCCACCTCATGGATCAGAGGTCTATATTGGGGGCATTCCTCAAAATGTTTCTGAAGAAGATTTGAGATCCTTCTGTCAATCTGTGGGAGAAGTGTCAGAGGTAAGGGTTATGAAGGGGAAAGAATCAGGTGAAGGATTAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATTGAGGAGCTGAACAATTCTGAATTTAAGGGAAAAAGAATAAAGTGCTCAACGTCTCAAGCTAACAATAGGTTGTTCATTGGTAATGTTCCTAAAAGTTGGACTGTAGAAGATATGAAGAAGGTTGTTGCAGAGGTTGGCCCTGGAGTCATTTCTGTGGAGCTCTTGAAGGATCCACAGAGTTCTGGCCGTAATAGGGGATTTGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAAACTCTAAATTTAAACTTGACAATAATGCTCCAACAGTGAGCTGGGCTGACCCAAGGAATTCTGATTCATCTGCAGCATCCCAGGTAAAAGCAGTGTATGTAAAGAATCTTCCAGAAAACATTACTCAGGATTGCCTTAAGAAGCTGTTTGAACATCATGGAAAAATCACAAAAGTGGTTCTCCCTCCTGCTAAAGCTGGACAAGAAAAAAGCAGATTTGGTTTTGTGCACTTTTCTGATAGGTCAAGTGCCATGAAGGCGTTGAAGAATACAGAGAAGTATGAAATTGAAGGCCAAACTTTGGAGTGTTCACTTGCTAAGCCACAGGCAGATCAGAAGTCGTCTGGTGCATCAAATTCACAAAAATCAGTTGTACTTCCCACTTATCCACCTCGTCTTGGTTATGGTATGGTTGGAGGTGCATATGGTGCTATTGGTGCAGGATATGGTGCTGCTGGCTTTGCACAACCACTCATGTATGGTGCGGGAGCAACCCCTGCTGGCATGGCAATGATGCCAATGCTTTTACCAGATGGAAGGATCGGATATGTGTTGCAACAGCCGGGTTTGCAACAGCCTGCTCCTTCACCAGTATCCCGTAATGGAAGAGGTGGTGGTGGTGGTAGCTCAAGTGGTGGCAAACGCAGTTATGATAATAACCGTAACCGTGGACATGGCCGATACCATCCCTACTAA 1290 0.4434 MPGTRQNPESPEGKPTDSDEQPSDGEDEMRVADTKDEVEKKKHADLLALPPHGSEVYIGGIPQNVSEEDLRSFCQSVGEVSEVRVMKGKESGEGLGYAFVTFKTKELASKAIEELNNSEFKGKRIKCSTSQANNRLFIGNVPKSWTVEDMKKVVAEVGPGVISVELLKDPQSSGRNRGFAFIEYYNHACAEYSRQKMSNSKFKLDNNAPTVSWADPRNSDSSAASQVKAVYVKNLPENITQDCLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIEGQTLECSLAKPQADQKSSGASNSQKSVVLPTYPPRLGYGMVGGAYGAIGAGYGAAGFAQPLMYGAGATPAGMAMMPMLLPDGRIGYVLQQPGLQQPAPSPVSRNGRGGGGGSSSGGKRSYDNNRNRGHGRYHPY 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi735g00014 429 SMART rrm1_1 55 128 IPR000504 GO:0003723
Sebi735g00014 429 SMART rrm1_1 135 212 IPR000504 GO:0003723
Sebi735g00014 429 SMART rrm1_1 229 302 IPR000504 GO:0003723
Sebi735g00014 429 MobiDBLite consensus disorder prediction 386 429 - -
Sebi735g00014 429 Gene3D - 3 134 IPR012677 -
Sebi735g00014 429 MobiDBLite consensus disorder prediction 387 415 - -
Sebi735g00014 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 306 IPR000504 GO:0003723
Sebi735g00014 429 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 18 422 - -
Sebi735g00014 429 SMART rrm2_1 55 128 IPR003954 GO:0003676
Sebi735g00014 429 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 135 215 - -
Sebi735g00014 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 126 IPR000504 GO:0003723
Sebi735g00014 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 203 IPR000504 GO:0003723
Sebi735g00014 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 299 IPR000504 GO:0003723
Sebi735g00014 429 SUPERFAMILY RNA-binding domain, RBD 133 306 IPR035979 GO:0003676
Sebi735g00014 429 Gene3D - 217 348 IPR012677 -
Sebi735g00014 429 SUPERFAMILY RNA-binding domain, RBD 51 132 IPR035979 GO:0003676
Sebi735g00014 429 MobiDBLite consensus disorder prediction 1 38 - -
Sebi735g00014 429 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 217 326 - -
Sebi735g00014 429 Gene3D - 135 215 IPR012677 -
Sebi735g00014 429 CDD RRM_SF 56 128 - -
Sebi735g00014 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 216 IPR000504 GO:0003723
Sebi735g00014 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 132 IPR000504 GO:0003723
Sebi735g00014 429 MobiDBLite consensus disorder prediction 12 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi735g00014 Sebi-Chr735 119344 122991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi735g00014 56 373 Eukaryotic Initiation Factors Gene Family AT4G34110 25.753 3.07e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi735g00014 K13161 - gmx:100798476 623.239