Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi733g00017 ATGTCCGATCATCCCACTCCCACAAACATGAACGACCAGCTCTCCAATTGGGTCTGGGCTACAATAGAATTCAGTTTGAGATTGGGAAGAACCATAGGATTTCGTACCCTGAACGTGCTTGCGTTAAGTCTTCTTCCCATGAAGGTAGTGGAGAGGCTCGACCCATGGATCAGGGAGCTTGAGGATGCCACCAATGGGTTTGCCCCAGAAAATGTTATTGGCGAAGGCGGCTATGGAATCGTTTATCATGGTATCTTGGAGGACAACACTAATATTGCAATTAAGAATTTGCTCAATAATAGGGGACAAGCTGAGAGAGAGTTTAAGGTTGAAGTGGAAGCTACAGGACGAGTTCGTCACAAGAATTTAGTGAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGAATGCTTGTGTATGAGTATGTTGACAATGGTAACTTGGAGCAATGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAACATTATTCTGGGAACTGCAAAAGGGTTAACTTATCTTCACGAGGGGTTGGAACCAAAAGTTGTACACCGTGATATTAAATCAAGCAACATTTTGCTTAGTAAGCAGTGGCATTCAAAGGTGTCAGATTTTGGCCTTGCCAAACTCCTTGGCCCTGAGAGCAGCTATATCACAACCCGTGTAATGGGTACATTTGGGTTTGTACAGTTTCCTTTGTCTGTTGCCCCATTCACTCCTGGAACTCCTGAATACGCAAGTACTGGTATGTTGAATGAACGAAGTGATGTGTATAGTTTTGGAATTCTTACAATGGAAGTAATTACAGGCGGGAATCCAGTTGATTATAGTAGGCCTCCAGAAGAGGTGAATTTAGTGGATTGGCTCAAGAAGATGGTCAGTAACAGAAATCCAGAGGGAGTGTTGGATCCCAAGCTCCCTGAGAAACCAACTTCAAGGGCACTAAAGCAAGCCCTTCTTGTAGCCTTACGCTGCACAGACCCTAATGCACAAAAGCGACCTAAAATGGGGCATGTAATACACATGCCTGAAGCTAAAGATCCCCCTTACAAAGAGCTAACAATCATTTCTGCTAAGTTAATTCAACCTCACTATGGTGCTAGTTAA 1128 0.4415 MSDHPTPTNMNDQLSNWVWATIEFSLRLGRTIGFRTLNVLALSLLPMKVVERLDPWIRELEDATNGFAPENVIGEGGYGIVYHGILEDNTNIAIKNLLNNRGQAEREFKVEVEATGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPCSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLSKQWHSKVSDFGLAKLLGPESSYITTRVMGTFGFVQFPLSVAPFTPGTPEYASTGMLNERSDVYSFGILTMEVITGGNPVDYSRPPEEVNLVDWLKKMVSNRNPEGVLDPKLPEKPTSRALKQALLVALRCTDPNAQKRPKMGHVIHMPEAKDPPYKELTIISAKLIQPHYGAS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi733g00017 375 ProSiteProfiles Protein kinase domain profile. 67 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi733g00017 375 ProSitePatterns Protein kinases ATP-binding region signature. 73 95 IPR017441 GO:0005524
Sebi733g00017 375 PANTHER OS01G0323000 PROTEIN 57 358 - -
Sebi733g00017 375 SMART serkin_6 67 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi733g00017 375 FunFam serine/threonine-protein kinase PBS1-like 54 142 - -
Sebi733g00017 375 Gene3D Transferase(Phosphotransferase) domain 1 143 359 - -
Sebi733g00017 375 FunFam Putative receptor-like serine/threonine-protein kinase 143 363 - -
Sebi733g00017 375 Gene3D Phosphorylase Kinase; domain 1 43 142 - -
Sebi733g00017 375 SUPERFAMILY Protein kinase-like (PK-like) 48 353 IPR011009 -
Sebi733g00017 375 CDD STKc_IRAK 73 349 - -
Sebi733g00017 375 Pfam Protein tyrosine and serine/threonine kinase 71 347 IPR001245 GO:0004672|GO:0006468
Sebi733g00017 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi733g00017 Sebi-Chr733 233962 235734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi733g00017 59 346 Trihelix Transcription Factor Family AT1G68690 44.863 1.92e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Sebi733g00017 PK_Tyr_Ser-Thr 7.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi733g00017 - - gmx:100797440 552.362