Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi731g00029 ATGACAGCAAAGTCTTCTGAGAAACAAAATGATCTGAATAGGACCCCAAGTAGGCTATCTTCCATGTTCAGTGGAACCCTGGACAAATGCTCAGTTTGCACAAAAACAGTCTATCCACTGGAAAAGGTGACATTGGAAGGGGAGTGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGTCCTCTGACACATTCAAACTATGCTGCACTTGATGGTGTCCTCTACTGCAGGGTCCATTTTGCACAACTTTTCATGGAGAAAGGGAGCTACAGCCATGTACTCAAAGCTGCTGCACACAAGAGGACTGGTTCTTCTACACCTCCTGAATCAATTGAACTGCCAGCAGCAGCAGCATCTGAGGAACAAAATGAAGACACATCTTGA 390 0.459 MTAKSSEKQNDLNRTPSRLSSMFSGTLDKCSVCTKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGSYSHVLKAAAHKRTGSSTPPESIELPAAAASEEQNEDTS 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi731g00029 129 MobiDBLite consensus disorder prediction 100 129 - -
Sebi731g00029 129 Pfam LIM domain 30 85 IPR001781 -
Sebi731g00029 129 FunFam LIM domain and actin-binding 1 24 94 - -
Sebi731g00029 129 PANTHER OS06G0237300 PROTEIN 5 124 - -
Sebi731g00029 129 SMART lim_4 29 81 IPR001781 -
Sebi731g00029 129 Gene3D Cysteine Rich Protein 26 94 - -
Sebi731g00029 129 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 22 55 - -
Sebi731g00029 129 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 56 95 - -
Sebi731g00029 129 ProSiteProfiles LIM domain profile. 28 88 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi731g00029 Sebi-Chr731 447577 448158 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi731g00029 LIM 3.8e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi731g00029 - K09377 gmx:100800234 232.646