Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi731g00021 ATGTGCGACTCCTTTGTGACCCTCTGTCGTCTATCGGGTGACTCACCAGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAACGCGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAAACCTTCTCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGACAATAATGTTATTCAAGTTGTTATCCTTGTCCCAACTCGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGCACAAGCCTGAAAGATGATATAATGCGTTTGTATCAACCTGTTCACTTACTAGTAGGAACGCCAGGAAGAATATTAGATCTTGCCAAGAAGGGTGTTTGTATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAACTTCTCTCCCCAGAGTTCCAACCTTCTATACAGCAGCTGATTCATTTTCTTCCTGCAAACCGTCAAATCCTGATGTTTTCGGCGACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGGTATCTTCATAGACCATATGTTATTAACCTTATGGACGAGCTCACTCTGAAGGGTATTACACAATATTATGCTTTCGTGGAAGAGAGACAGAAAGTCCACTGCTTAAATACTCTTTTTTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACGGAGCTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCATCGTAATAGAGTGTTTCATGACTTCCGCAATGGTGCATGCCGAAATCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTAAATGTTGTTATTAATTTTGATTTTCCCAAGAATTCAGAAACTTATTTGCACAGGGTTGGTCGCTCAGGGAGGTTTGGCCACCTTGGTTTGGCAGTAAACTTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCACCACACATTGATCAGGCAATTTATTGCCGGTGA 1197 0.3952 MCDSFVTLCRLSGDSPDVTATKGNEFEDYFLKRELLMGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIQQLIHFLPANRQILMFSATFPVTVKDFKDRYLHRPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi731g00021 398 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 14 397 - -
Sebi731g00021 398 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 171 179 IPR000629 -
Sebi731g00021 398 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 24 52 IPR014014 GO:0003724
Sebi731g00021 398 SMART ultradead3 43 239 IPR014001 -
Sebi731g00021 398 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 235 395 IPR001650 -
Sebi731g00021 398 Pfam Helicase conserved C-terminal domain 250 356 IPR001650 -
Sebi731g00021 398 FunFam ATP-dependent RNA helicase DDX6 9 228 - -
Sebi731g00021 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 378 IPR027417 -
Sebi731g00021 398 Gene3D - 12 228 IPR027417 -
Sebi731g00021 398 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 55 225 IPR014001 -
Sebi731g00021 398 Gene3D - 229 398 IPR027417 -
Sebi731g00021 398 Pfam DEAD/DEAH box helicase 49 213 IPR011545 GO:0003676|GO:0005524
Sebi731g00021 398 CDD SF2_C_DEAD 236 365 - -
Sebi731g00021 398 SMART helicmild6 275 356 IPR001650 -
Sebi731g00021 398 FunFam ATP-dependent RNA helicase DDX6 229 398 - -
Sebi731g00021 398 CDD DEADc_DDX6 26 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi731g00021 Sebi-Chr731 371412 375071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi731g00021 26 391 Eukaryotic Initiation Factors Gene Family AT3G19760 38.587 2.58e-96 292